BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOAC (Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CH +  GA +  GP+LNG+  R++G   G++YS ANKN  + W+E T  +Y+  P+K +PGTKM FPGL    DR ++ AYL Q  A
Sbjct:   17 CHKIGPGAKNGVGPSLNGVANRKAGQAEGFAYSDANKNSGLTWDEATFKEYITAPQKKVPGTKMTFPGLPNEADRDNIWAYLSQFKA 103          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOGL (Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CHT  KG  +K GP+L G+ GR SG  PGY+YS AN    + W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct:   22 CHTDIKGR-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CY550_NITWI (Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 340
            CH + + A +K GP L+GL GR SG   GY+YS ANK   + W E    +Y+ +PK  +PGTKMVF G+KK  +  +L AY+ Q
Sbjct:   16 CHEIGESAKNKVGPELDGLDGRHSGAVEGYAYSPANKASGITWTEAEFKEYIKDPKAKVPGTKMVFAGIKKDSELDNLWAYVSQ 99          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC22_RHOFU (Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+VE G  +  GP+L G++GR++GT  G+ +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D A +IAYLK
Sbjct:   13 CHSVEAGK-NGVGPSLAGVYGRKAGTLAGFKFSDPHAKSGLTWDEPTLTKYLADPKGVIPGNKMVFAGLKNPADVAAVIAYLK 94          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC22_RHOMO (Cytochrome c2 iso-2 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.806e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+VE G  +  GP+L G++GR++GT  G+ +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D   +I YLK
Sbjct:   13 CHSVEAGK-NGVGPSLAGVYGRKAGTISGFKFSDPHIKSGLTWDEPTLTKYLADPKTVIPGNKMVFAGLKNPDDVKAVIEYLK 94          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_AGRTC (Cytochrome c2 OS=Agrobacterium tumefaciens (strain II Chrys) PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNM---AVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 334
            CH + +GA +K GP LNG+ GR +G  P Y+YS A K      + W  + L D+L  PKK IPG KM   G+ KP++  +LIAYL
Sbjct:   17 CHAIGEGAKNKVGPQLNGIIGRTAGGDPDYNYSNAMKKAGGEGLVWTPQELRDFLSAPKKKIPGNKMALAGISKPEELDNLIAYL 101          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_AGRT5 (Cytochrome c homolog OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cycM PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA----NKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CHT E G  +K GPNL  +  R   +  G+SYSA     +K  +V+W+   L  +L  PKK++PGT M F G+KK  +RADLIAYL+  +A
Sbjct:   86 CHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSA 176          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CY550_THINO (Cytochrome c-550 (Fragment) OS=Thiobacillus novellus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CH V +GA +K GP LNG+ GR+ G+  G++YS   K        W  + L  YL NPK Y+PG KMVF GL K     DL AYLK   A
Sbjct:   14 CHAVGEGAKNKVGPELNGIIGRKMGSIEGFNYSDTLKEHNAKGDVWTAEILSQYLANPKGYMPGVKMVFAGLPKEIRADDLEAYLKTFNA 103          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCY_RHOCA (Cytochrome c-type cyt cy OS=Rhodobacter capsulatus GN=cycY PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.208e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 334
            CH ++    +  GP+LNG+ GR + T  G+ YS A KN   NW  + L  YL++PK  +PGTKM F GL +  DRA++IAYL
Sbjct:  115 CHKID--GKNAVGPHLNGVIGRATATVEGFKYSTAMKNHVGNWTPERLDIYLVSPKAEVPGTKMSFVGLPEAADRANVIAYL 194          

HSP 2 Score: 20.7866 bits (42), Expect = 3.208e-14
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKC 81
            G+AKAGE+ F   C
Sbjct:   99 GDAKAGEEKFNKTC 112          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_RICBR (Cytochrome c homolog OS=Rickettsia bellii (strain RML369-C) GN=cycM PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+++K   +K GP+L  + GR   +   Y YS A   +  NW++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   85 CHSLDKDGPNKIGPHLWDVAGRPKASITDYKYSPALSALGGNWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 167          
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC2_RHOAC1.122e-1745.98Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 ... [more]
CYC2_RHOGL3.264e-1750.60Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1[more]
CY550_NITWI1.240e-1646.43Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 ... [more]
CYC22_RHOFU4.713e-1649.40Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 ... [more]
CYC22_RHOMO6.806e-1546.99Cytochrome c2 iso-2 OS=Rhodospirillum molischianum... [more]
CYC2_AGRTC1.516e-1445.88Cytochrome c2 OS=Agrobacterium tumefaciens (strain... [more]
CYCM_AGRT52.586e-1445.05Cytochrome c homolog OS=Agrobacterium tumefaciens ... [more]
CY550_THINO2.586e-1446.67Cytochrome c-550 (Fragment) OS=Thiobacillus novell... [more]
CYCY_RHOCA3.208e-1446.34Cytochrome c-type cyt cy OS=Rhodobacter capsulatus... [more]
CYCM_RICBR5.761e-1442.17Cytochrome c homolog OS=Rickettsia bellii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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