BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:76..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_TETPY (Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH +E  +     P L G+ GR++G    ++YS   K   + W EK L+ +L NP K++PGTKM F GL   +DRADLIAYLK
Sbjct:   28 CHAIEGDS--TAAPVLGGVIGRKAGQEK-FAYSKGMKGSGITWNEKHLFVFLKNPSKHVPGTKMAFAGLPADKDRADLIAYLK 107          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_RICTY (Cytochrome c homolog OS=Rickettsia typhi GN=cycM PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+++K   +K GP+L  + GR   +   Y YS A   +   W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   87 CHSLDKDGPNKLGPHLWNIVGRSKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_RICPR (Cytochrome c homolog OS=Rickettsia prowazekii GN=cycM PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+++K   +K GP+L  + GR   +   Y YS A   +   W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   87 CHSLDKDGPNKLGPHLWNIVGRPKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_BRAJA (Cytochrome c homolog OS=Bradyrhizobium japonicum GN=cycM PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 334
            CHT EKG  ++ GPNL G+ G   G    G+++SAA K     W    L  ++ NPK +IPGT M F G+ K  +RAD+IAYL
Sbjct:   87 CHTFEKGGPNRVGPNLYGVVGEARGEGRNGFNFSAAMKGKGGTWTFDDLNKFIANPKGFIPGTAMGFAGIPKDSERADVIAYL 169          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_RICFE (Cytochrome c homolog OS=Rickettsia felis GN=cycM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+++K   +K GP+L  + GR   +   Y YS A   +   W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   87 CHSLDKDGPNKLGPHLWDVAGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCM_RICCN (Cytochrome c homolog OS=Rickettsia conorii GN=cycM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+++K   +K GP+L  + GR   +   Y YS A   +   W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   87 CHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC21_RHOFU (Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 337
            CH++E G  +  GP+L+G +GR+ G  P Y YSAA+    +  +E  L +YL NPK  IPG KM   F GLKKP+D   +I YLK
Sbjct:   13 CHSIEAGK-NGVGPSLSGAYGRKVGLAPNYKYSAAHLASGMTIDEAMLTNYLANPKATIPGNKMGASFGGLKKPEDVKAVIEYLK 96          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC21_RHOMO (Cytochrome c2 iso-1 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 337
            CH+++ G  +  GP+L+G +GR+ G  P Y YS A+    +  ++  L  YL NPK+ IPG KM   F GLK P D A +IAYLK
Sbjct:   14 CHSIDAGK-NGVGPSLSGAYGRKVGLAPNYKYSPAHLASGMTIDDAMLTKYLANPKETIPGNKMGAAFGGLKNPADVAAVIAYLK 97          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC23_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW-EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH VE G     GP+L GLFG + G  PG+ YS A+   A    +E  L  YL +PK  +PG KMVF GLK P D   ++AYLK
Sbjct:   13 CHKVEAGEDGV-GPSLFGLFGHKLGQAPGFKYSEAHLKFAQQTVDEPFLTKYLADPKASLPGNKMVFAGLKNPDDVKAVLAYLK 95          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CY552_PARDE (Cytochrome c-552 OS=Paracoccus denitrificans GN=cycM PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH ++   G   GP+LNG+ GR      G++YS   K    +W  + L ++L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct:   93 CHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 173          
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC_TETPY9.827e-1445.78Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1[more]
CYCM_RICTY9.827e-1440.96Cytochrome c homolog OS=Rickettsia typhi GN=cycM P... [more]
CYCM_RICPR1.283e-1340.96Cytochrome c homolog OS=Rickettsia prowazekii GN=c... [more]
CYCM_BRAJA1.283e-1345.78Cytochrome c homolog OS=Bradyrhizobium japonicum G... [more]
CYCM_RICFE2.859e-1340.96Cytochrome c homolog OS=Rickettsia felis GN=cycM P... [more]
CYCM_RICCN2.859e-1340.96Cytochrome c homolog OS=Rickettsia conorii GN=cycM... [more]
CYC21_RHOFU3.734e-1347.06Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 ... [more]
CYC21_RHOMO2.421e-1244.71Cytochrome c2 iso-1 OS=Rhodospirillum molischianum... [more]
CYC23_RHOCR3.161e-1247.62Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CY552_PARDE3.161e-1243.37Cytochrome c-552 OS=Paracoccus denitrificans GN=cy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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