BQ623592 | Citrus Genome Database

Overview


Name	BQ623592
Unique Name	BQ623592
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	588

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8865	contig	Csv1_Contig8865:76..662.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.564e-30
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   21 QCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107

HSP 2 Score: 22.7126 bits (47), Expect = 2.564e-30
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1

Query:   34 PPGNAKAGEKIFKTKCA 84
            P G+ + G+KIF  +CA
Sbjct:    4 PAGDVEKGKKIFVQRCA 20

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_PECGU (Cytochrome c OS=Pectinaria gouldii PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.564e-30
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W + TL+ YL NPKKYIPGTKM+F GLKK  +RADLIAYL++ST
Sbjct:   22 QCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGITWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEEST 108

HSP 2 Score: 23.483 bits (49), Expect = 2.564e-30
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 1

Query:   28 EAPPGNAKAGEKIFKTKCA 84
            + P G+A  G+K+F  +CA
Sbjct:    3 DIPAGDAAKGKKVFVQRCA 21

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CANAL (Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.339e-30
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKKP+DR DL+ YLK++T+
Sbjct:   23 QCHTVEKGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLKKATS 110

HSP 2 Score: 21.1718 bits (43), Expect = 3.339e-30
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKC 81
            G+ K G  +FKT+C
Sbjct:    8 GSEKKGATLFKTRC 21

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 3.339e-30
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W+E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLKQST+
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEGTLLEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104

HSP 2 Score: 21.9422 bits (45), Expect = 3.339e-30
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+A+ G+KIF  KC+
Sbjct:    2 GDAEKGKKIFVQKCS 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_BOVIN (Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.339e-30
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F GLKK  +R DLI YLKQ+T+
Sbjct:   17 QCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTEANKNKGIIWGEQTLMEYLENPKKYIPGTKMIFAGLKKKSEREDLIEYLKQATS 104

HSP 2 Score: 22.3274 bits (46), Expect = 3.339e-30
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1

Query:   43 NAKAGEKIFKTKCA 84
            +A+AG+KIF  KCA
Sbjct:    3 DAEAGKKIFIQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_ANAPL (Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.362e-30
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +TA
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATA 104

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.349e-30
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNLNGL GR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   17 QCHTVEKGGKHKTGPNLNGLIGRKTGQAEGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKDATS 104

HSP 2 Score: 21.557 bits (44), Expect = 4.349e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_RABIT (Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.375e-30
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKDERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 7.375e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_LAMGU (Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.375e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 7.375e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_ESCGI (Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.375e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 7.375e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

The following BLAST results are available for this feature:

BLAST of BQ623592 vs. ExPASy Swiss-Prot

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171


Match Name	E-value	Identity	Description
CYC_LUCCU	2.564e-30	64.37	Cytochrome c OS=Lucilia cuprina PE=1 SV=2	[more]
CYC_PECGU	2.564e-30	66.67	Cytochrome c OS=Pectinaria gouldii PE=3 SV=1	[more]
CYC_CANAL	3.339e-30	67.05	Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3	[more]
CYC2_XENTR	3.339e-30	67.05	Cytochrome c, testis-specific OS=Xenopus tropicali...	[more]
CYC2_BOVIN	3.339e-30	67.05	Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3	[more]
CYC_ANAPL	3.362e-30	67.05	Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=...	[more]
CYC_CHESE	4.349e-30	65.91	Cytochrome c OS=Chelydra serpentina PE=1 SV=2	[more]
CYC_RABIT	7.375e-30	66.67	Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1...	[more]
CYC_LAMGU	7.375e-30	66.67	Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2	[more]
CYC_ESCGI	7.375e-30	66.67	Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA