BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.226e-80
Identity = 124/150 (82.67%), Postives = 138/150 (92.00%), Query Frame = 2 
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +K  CLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP  ID+++Y
Sbjct:  319 QKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLY 468

HSP 2 Score: 58.9214 bits (141), Expect = 1.226e-80
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            QKPY INLM+ELTLKG+TQYYA+V ERQKVH
Sbjct:  292 QKPYEINLMEELTLKGVTQYYAYVTERQKVH 322
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.599e-80
Identity = 124/152 (81.58%), Postives = 137/152 (90.13%), Query Frame = 2 
Query:   77 KGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            + +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HAKMLQ HRNRVFH+FRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGH GLA++ I++ DRFNLYRIE ELGTEI+ IPP ID ++Y
Sbjct:  265 ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSLY 416

HSP 2 Score: 57.3806 bits (137), Expect = 1.599e-80
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLMDELTL+G+TQYYAFV+E QKVH
Sbjct:  241 KPYEINLMDELTLRGVTQYYAFVDESQKVH 270
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 2.720e-80
Identity = 124/150 (82.67%), Postives = 137/150 (91.33%), Query Frame = 2 
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +K  CLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP  ID+ +Y
Sbjct:  319 QKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKNLY 468

HSP 2 Score: 58.9214 bits (141), Expect = 2.720e-80
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            QKPY INLM+ELTLKG+TQYYA+V ERQKVH
Sbjct:  292 QKPYEINLMEELTLKGVTQYYAYVTERQKVH 322
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 4.628e-80
Identity = 123/150 (82.00%), Postives = 138/150 (92.00%), Query Frame = 2 
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +K  CLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+G SGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  320 QKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469

HSP 2 Score: 58.9214 bits (141), Expect = 4.628e-80
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            QKPY INLM+ELTLKG+TQYYA+V ERQKVH
Sbjct:  293 QKPYEINLMEELTLKGVTQYYAYVTERQKVH 323
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 6.038e-80
Identity = 123/154 (79.87%), Postives = 139/154 (90.26%), Query Frame = 2 
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQSIIFCNS  RVELLAKKITELGY C+YIHAKM Q HRNRVFHDFR G CRNLVC+DLFTRGID+QAVNVVINFDFP+ +ETYLHR+GRSGRFGHLG+A+NLITYEDRF+L+RIE+ELGTEIK IP  ID A+Y
Sbjct:  277 VQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPKVIDPALY 430

HSP 2 Score: 58.151 bits (139), Expect = 6.038e-80
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            ++PY INLM+ELTLKG+TQYYAFV+ERQKVH
Sbjct:  254 REPYEINLMEELTLKGVTQYYAFVQERQKVH 284
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.027e-79
Identity = 122/150 (81.33%), Postives = 137/150 (91.33%), Query Frame = 2 
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +K  CLNTLF +LQ NQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  309 QKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 458

HSP 2 Score: 58.9214 bits (141), Expect = 1.027e-79
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            QKPY INLM+ELTLKG+TQYYA+V ERQKVH
Sbjct:  282 QKPYEINLMEELTLKGVTQYYAYVTERQKVH 312
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.971e-79
Identity = 122/154 (79.22%), Postives = 139/154 (90.26%), Query Frame = 2 
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HAKM Q  RNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGR+GHLGLA+NLI ++DRFNLY IE++LGTEI+ IP  ID+++Y
Sbjct:  230 VEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDKSLY 383

HSP 2 Score: 56.9954 bits (136), Expect = 2.971e-79
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    7 PYVINLMDELTLKGITQYYAFVEERQKVH 93
            PY INLMDELTL+GITQYYA+VEE+QKVH
Sbjct:  209 PYEINLMDELTLRGITQYYAYVEEKQKVH 237
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.054e-79
Identity = 120/150 (80.00%), Postives = 135/150 (90.00%), Query Frame = 2 
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +K  CLNTLFSKL INQSIIFCNS  RVELLA+KITELGYSC+Y HAKM+Q HRNRVFH+FRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLG+A+NLI + DR+NLY+IEQELGTEIK IP  ID+ +Y
Sbjct:  251 QKLHCLNTLFSKLDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQELGTEIKPIPAQIDKNLY 400

HSP 2 Score: 57.7658 bits (138), Expect = 5.054e-79
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLMDELTL+GITQYYAFV+E+QK+H
Sbjct:  225 KPYEINLMDELTLRGITQYYAFVDEKQKLH 254
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 7.856e-77
Identity = 120/154 (77.92%), Postives = 134/154 (87.01%), Query Frame = 2 
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKK+TELGYSCFY HAKM Q HRNRVFHDFRNG  RNLVC+DL TRGIDIQAVNVVINFDFP+ +E+YLHR+GRSGRFGHLGLA++L+T EDR NLYRIE ELGTEI  IP  ID  +Y
Sbjct:  256 VEESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLY 409

HSP 2 Score: 56.9954 bits (136), Expect = 7.856e-77
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            +PY INLMDELTLKG+TQYYA+VEE QKVH
Sbjct:  234 QPYEINLMDELTLKGVTQYYAYVEESQKVH 263
[Close]
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 7.857e-77
Identity = 120/154 (77.92%), Postives = 134/154 (87.01%), Query Frame = 2 
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKK+TELGYSCFY HAKM Q HRNRVFHDFRNG  RNLVC+DL TRGIDIQAVNVVINFDFP+ +E+YLHR+GRSGRFGHLGLA++L+T EDR NLYRIE ELGTEI  IP  ID  +Y
Sbjct:  256 VEESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLY 409

HSP 2 Score: 56.9954 bits (136), Expect = 7.857e-77
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            +PY INLMDELTLKG+TQYYA+VEE QKVH
Sbjct:  234 QPYEINLMDELTLKGVTQYYAYVEESQKVH 263
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX6_XENTR1.226e-8082.67Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DHH1_SCHPO1.599e-8081.58Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
DDX6_XENLA2.720e-8082.67ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
DDX6_PONAB4.628e-8082.00Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_DROME6.038e-8079.87Putative ATP-dependent RNA helicase me31b OS=Droso... [more]
DDX6_CAVPO1.027e-7981.33Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
DHH1_CHAGB2.971e-7979.22ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_YARLI5.054e-7980.00ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_CRYNE7.856e-7777.92ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DHH1_CRYNV7.857e-7777.92ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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