BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.681e-29
Identity = 57/150 (38.00%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            K+  K   L  L+  L I Q++IFCN+  +V  LA ++ +  ++   +H  M Q+ R+ +  +FR+G+ R L+ TD++ RGID+Q V++VIN+D P + E Y+HR+GRSGRFG  G A+NL+T +D+  L  ++    T+I+++P  + +
Sbjct:  246 KEDWKFDTLCDLYDNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIREVPADLSK 395          

HSP 2 Score: 24.6386 bits (52), Expect = 2.681e-29
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            D++TLKGI QYY   E+
Sbjct:  230 DDVTLKGIKQYYIQCEK 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 61/148 (41.22%), Postives = 96/148 (64.86%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H +M+Q  R+ +  +FR G  R L+ TD++ RGID+Q V++VIN+D P + E YLHR+GRSGRFG  G+A+N +T +D   L  IEQ   T+I ++P ++
Sbjct:  245 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIEQYYSTQIDEMPMNV 392          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 58/152 (38.16%), Postives = 97/152 (63.82%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V  L  ++ +  ++   +H  M Q+ R+ + +DFR+G  R L+ TD++ RGID+Q +++VIN+D P + E Y+HR+GRSGRFG  G A+NL+T  D   L  +E+   T+IK++P +++  +
Sbjct:  248 KEDWKFDTLCDLYDNLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKALEKYYSTKIKEMPSNVNDVM 399          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            SL    +    + +++  K   L  L+  + I QS+IF N+  +V+ LA+++ +  ++   +H++M +  R +V   FRNG+ R LV TDL  RGID+  VN+VINFD P N E+YLHR+GR GR+G  G+A+N +T +D   L  IE    T+I ++P  +D A Y
Sbjct:  237 SLTLEGIKQYFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIDELP--VDFAAY 401          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.003e-28
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 2
Query:  107 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            L+  L I QS+IFCN+  +V+ L ++++   ++   +H  M Q  R  +   FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N IT +DR  L  IEQ   T I+++P +I   I
Sbjct:  263 LYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          

HSP 2 Score: 23.483 bits (49), Expect = 1.003e-28
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            +ELTL+GI Q+Y  V++
Sbjct:  236 EELTLEGIKQFYVNVKQ 252          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 65/167 (38.92%), Postives = 99/167 (59.28%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            SL    +    + +++  K   L  L+  + I QS+IF N+  +V+ LA ++    ++   +H++M +  R +V   FRNG+ R LV TDL  RGID+  VN+VINFD P N E YLHR+GR GR+G  G+A+N +T +D   L  IE    T+I+++P  +D A Y
Sbjct:  237 SLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIEELP--VDFAAY 401          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 61/149 (40.94%), Postives = 95/149 (63.76%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHID 520
            K+  K   L  L+  L I Q++IFCN+  +V  L  ++ +  ++   +H  M QD R+ + +DFR G  R L+ TD++ RGID+Q V++VIN+D P + E Y+HR+GRSGRFG  G+A+NL+T ED   L  IE+     IK++P +++
Sbjct:  248 KEDWKFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVN 396          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.306e-28
Identity = 55/152 (36.18%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  + I Q++IFC++  +V+ L +++ +  ++   +H  M Q+ R  +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P + E Y+HR+GR GRFG  G+A+N ++ ED+  L  IE    T+++++P ++   I
Sbjct:  250 KEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          

HSP 2 Score: 26.5646 bits (57), Expect = 1.306e-28
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  234 DELTLEGIRQFYINVEKEE 252          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.658e-28
Identity = 61/152 (40.13%), Postives = 95/152 (62.50%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L+ K+ E  +    +H +M Q  R+ V  +FR G+ R L+ TD++ RGIDI  +++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T +D   L  IEQ   T+I ++P  ++  +
Sbjct:  246 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.213e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 2.213e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_PICGU2.681e-2938.00ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_CRYNE3.340e-2941.22ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_LODEL5.698e-2938.16ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
IF4A_TRYCR9.719e-2938.92Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_DROME1.003e-2843.26Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_TRYBB1.269e-2838.92Probable eukaryotic initiation factor 4A OS=Trypan... [more]
FAL1_DEBHA1.269e-2840.94ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
IF4A_CRYNE1.306e-2836.18ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
FAL1_USTMA1.658e-2840.13ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A1_MACFA2.213e-2839.86Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
back to top