BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.214e-28
Identity = 57/145 (39.31%), Postives = 91/145 (62.76%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  L+ +L INQ+IIFCN+  +V+ L +K+    +    +H    Q  R+ + + FR+   R L+ +D++ RGID+Q V+ VIN+D P N E Y+HR+GR+GRFG  G+A+N +   D  +L  IE+  GT+I+++P
Sbjct:  244 KEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMP 388          

HSP 2 Score: 27.335 bits (59), Expect = 2.214e-28
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI QYY  V++ +
Sbjct:  228 DELTLEGIKQYYVDVDKEE 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.880e-28
Identity = 58/148 (39.19%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VINFD P   E YLHR+GRSGRFG  G+A+N +T +D+  L+ I++     ++++P ++
Sbjct:  261 KEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNV 408          

HSP 2 Score: 26.1794 bits (56), Expect = 2.880e-28
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  245 DELTLEGIKQFYVNVEK 261          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.881e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 2.881e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.881e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 2.881e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.881e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 2.881e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.881e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 2.881e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.882e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N++T ED+  L  IE    T I+++P ++   I
Sbjct:  251 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 398          

HSP 2 Score: 24.6386 bits (52), Expect = 2.882e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  231 EELTLEGIRQFYINVEREE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.882e-28
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H  M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED
Sbjct:  249 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSED 374          

HSP 2 Score: 25.409 bits (54), Expect = 2.882e-28
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+G+ QY+  VE+
Sbjct:  233 DELTLEGLKQYFIAVEK 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.749e-28
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VINFD P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     ++++P ++
Sbjct:  261 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNV 408          

HSP 2 Score: 26.9498 bits (58), Expect = 3.749e-28
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  245 DELTLEGIKQFYVNVEKEE 263          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L++K+    ++   +H  M Q  R+ + ++FR+G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  257 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH34_ARATH2.214e-2839.31DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A2_ARATH2.880e-2839.19Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A1_PONAB2.881e-2839.86Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A1_MOUSE2.881e-2839.86Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_HUMAN2.881e-2839.86Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN2.881e-2839.86Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A1_RABIT2.882e-2839.86Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
FAL1_CHAGB2.882e-2844.44ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
IF4A1_ARATH3.749e-2839.19Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
RH2_ARATH6.300e-2839.47DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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