BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.354e-28
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     I+++P ++
Sbjct:  263 KEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANV 410          

HSP 2 Score: 26.1794 bits (56), Expect = 6.354e-28
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  247 DELTLEGIKQFYVNVEK 263          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28
Identity = 60/152 (39.47%), Postives = 95/152 (62.50%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L +++    ++   +H  M Q  R+ +  +FR+GA R L+ TD++ RG+D+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +  ED   L  IEQ   T+I ++P ++   I
Sbjct:  253 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28
Identity = 60/152 (39.47%), Postives = 95/152 (62.50%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L +++    ++   +H  M Q  R+ +  +FR+GA R L+ TD++ RG+D+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +  ED   L  IEQ   T+I ++P ++   I
Sbjct:  253 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.274e-28
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+ +N++T ED+  L  IE    T I+++P ++   I
Sbjct:  259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          

HSP 2 Score: 24.6386 bits (52), Expect = 8.274e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  239 EELTLEGIRQFYINVEREE 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 60/152 (39.47%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H  M Q  R+ +  +FR G  R L+ TD++ RG+D+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  240 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.076e-27
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L +  K+  LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   + +F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  + +  D   L ++++    +IK++P  ID + Y
Sbjct:  275 LSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTY 429          

HSP 2 Score: 23.0978 bits (48), Expect = 1.076e-27
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  + E +K
Sbjct:  250 QDPMEIYVDDEAKLTLHGLVQHYIKLSEAEK 280          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.076e-27
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L +  K+  LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   + +F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  + +  D   L ++++    +IK++P  ID + Y
Sbjct:  275 LSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTY 429          

HSP 2 Score: 23.0978 bits (48), Expect = 1.076e-27
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  + E +K
Sbjct:  250 QDPMEIYVDDEAKLTLHGLVQHYIKLSEAEK 280          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     I+++P ++
Sbjct:  263 KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANV 410          

HSP 2 Score: 26.9498 bits (58), Expect = 1.077e-27
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  247 DELTLEGIKQFYVNVEKEE 265          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_ORYSJ6.354e-2839.19Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
RH34_ORYSJ8.228e-2839.47DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH2_ORYSJ8.228e-2839.47DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
IF4A1_PANTR8.274e-2839.19Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A3_NICPL1.075e-2739.47Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH56_ORYSJ1.076e-2740.65DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ1.076e-2740.65DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
IF4A1_ORYSJ1.077e-2739.19Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A2_RAT1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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