BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  261 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 408          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  241 EELTLEGIKQFYINVEREE 259          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.077e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IF N+  +V+ L +K+    ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED+  L  IE    T ++++P ++   I
Sbjct:  260 KLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-27
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            +ELTL+GI Q+Y  VE  +
Sbjct:  240 EELTLEGIKQFYINVEREE 258          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.401e-27
Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            ++K RK   LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG  GLA+  + +  D   L ++++    +IK++P  ID + Y
Sbjct:  273 MEKNRK---LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTY 424          

HSP 2 Score: 23.0978 bits (48), Expect = 1.401e-27
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  + E +K
Sbjct:  245 QDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.401e-27
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L +  K+  LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG  GLA+  + +  D   L ++++    +IK++P  ID + Y
Sbjct:  270 LSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTY 424          

HSP 2 Score: 23.0978 bits (48), Expect = 1.401e-27
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  + E +K
Sbjct:  245 QDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.376e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNV 409          

HSP 2 Score: 25.7942 bits (55), Expect = 2.376e-27
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:  246 DELTLEGIKQFYVNVDKEE 264          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.376e-27
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANV 409          

HSP 2 Score: 25.7942 bits (55), Expect = 2.376e-27
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:  246 DELTLEGIKQFYVNVDKEE 264          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_MOUSE1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_MACFA1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A2_HUMAN1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_CHICK1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A2_BOVIN1.077e-2739.19Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
RH56_ARATH1.401e-2741.94DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH1.401e-2741.29DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
IF4A3_DANRE1.833e-2738.51Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
IF4A8_TOBAC2.376e-2739.19Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A2_NICPL2.376e-2739.19Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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