BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  264 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  265 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 412          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  264 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  267 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 414          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  ++  L I Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V +DFR G  R L+ TD++ RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT  D   L  IE+    +I  +P
Sbjct:  248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  ++  L I Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V +DFR G  R L+ TD++ RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT  D   L  IE+    +I  +P
Sbjct:  248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.026e-27
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VINFD P   E YLHR+GRSGRFG  G+A+N +T ED   +  I++     ++++P ++
Sbjct:  263 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSNV 410          

HSP 2 Score: 25.7942 bits (55), Expect = 4.026e-27
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:  247 DELTLEGIKQFYVNVDKEE 265          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  L I Q++IFCN+  +V+ L +K+ E  ++   +H  M Q  R  +  +FR+GA R L+ TD++ RG+D+  V+++IN+D P N E Y+HR+GRSGR+G  G+A+N +  +D   L  IEQ   T+I ++P ++   I
Sbjct:  268 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.289e-27
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+++N +T +D   L+ I++     I+++P ++
Sbjct:  103 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANV 250          

HSP 2 Score: 25.7942 bits (55), Expect = 5.289e-27
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:   87 DELTLEGIKQFYVNVDKEE 105          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.814e-27
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   65 LLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L L++  K+  LN L   L+ NQ  IF  SV R   L   + E  +    IH+ + Q  R   F  F+    R LV TD+F RGID++ VNVVIN+D P ++++YLHRVGR+GRFG  GLA++ ++ + D+  L RI++     I  +P  +D A Y
Sbjct:  283 LKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATY 439          

HSP 2 Score: 27.7202 bits (60), Expect = 6.814e-27
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  +EER+K
Sbjct:  260 QSPLEIYVDDETKLTLHGLQQFYLKLEEREK 290          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_HUMAN2.394e-2738.51Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK2.394e-2738.51Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN2.394e-2738.51Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
I4A3B_XENLA2.394e-2738.51Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_YEAST2.394e-2740.00ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS72.394e-2740.00ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF4A3_ARATH4.026e-2739.19Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
I4A3A_XENLA4.083e-2738.51Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A6_TOBAC5.289e-2738.51Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
SUB2_CRYNE6.814e-2740.13ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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