BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.881e-27
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   ++ +++     ++++P ++
Sbjct:  259 KEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYNVTVEELPANV 406          

HSP 2 Score: 24.6386 bits (52), Expect = 8.881e-27
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  +++
Sbjct:  243 DELTLEGIKQFYVNIDK 259          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.156e-26
Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+++N +T +D   L  I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPANV 409          

HSP 2 Score: 25.7942 bits (55), Expect = 1.156e-26
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:  246 DELTLEGIKQFYVNVDKEE 264          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.958e-26
Identity = 56/148 (37.84%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+G SGRFG  G+++N +T +D   L+ I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANV 409          

HSP 2 Score: 25.7942 bits (55), Expect = 1.958e-26
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  V++ +
Sbjct:  246 DELTLEGIKQFYVNVDKEE 264          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.317e-26
Identity = 61/155 (39.35%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            LK+  K+  L  L   L+ NQ +IF  +V R E L + +TE  +    IH +M Q+ R   +  F++   R LV TDLF RG+DI+ VN+V N+D P++S++YLHRV R+GRFG  GLA+  ++ E D   L  ++      I ++P  ID + Y
Sbjct:  265 LKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTY 419          

HSP 2 Score: 23.0978 bits (48), Expect = 4.317e-26
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  + + DE  LTL G+ Q+Y  ++E +K
Sbjct:  240 QDPMEVYVDDEAKLTLHGLQQHYVKLKEAEK 270          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 56/145 (38.62%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  ++  L I Q++IFCN+  +V+ L +++ +  ++   +H  M+Q  R  +   FR+G  R L+ TD+  RGID+Q V++VIN+D P + E Y+HR+GRSGRFG  G+A+N +   D   L  IEQ   T+I ++P
Sbjct:  254 KEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMP 398          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L+ I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANV 409          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.313e-26
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            LK+  K+  L  L   L+ NQ +IF  SV R   L++ +TE  +    IH  M Q+ R   +  F++   R LV T+LF RG+DI+ VN+V N+D P++S+TYLHRV R+GRFG  GLA+  ++ E D   L  ++      I ++P  ID + Y
Sbjct:  266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTY 420          

HSP 2 Score: 23.483 bits (49), Expect = 7.313e-26
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  + + DE  LTL G+ Q+Y  ++E +K
Sbjct:  241 QDPMEVYVDDEAKLTLHGLQQHYVNLKENEK 271          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I QS+IF N+  +V+ L  K+    ++    H  M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P   E YLHR+GRSGRFG  G+A+N +T +D   L  I++     I+++P ++
Sbjct:  262 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANV 409          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.017e-25
Identity = 59/158 (37.34%), Postives = 93/158 (58.86%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPP-HIDQAIYCR 538
            L++  K+  LN L  +L  NQ IIF  S  R   L K + E  +    IH+ + Q+ R + F+DF++   R  V TD+F RGID+  +N+ IN+D P ++++YLHRVGR+GRFG  GLA++ ++ E D+  L  +E+     + + P   +D A Y +
Sbjct:  285 LEEREKNRRLNELLDELSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAYTK 442          

HSP 2 Score: 27.335 bits (59), Expect = 6.017e-25
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + +E  LTL G+ QYY  +EER+K
Sbjct:  260 QNPLEIYIDNETKLTLYGLQQYYIKLEEREK 290          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 7.833e-25
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNL-ITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L++  K+  +N L   L+ NQ +IF  SV+R   L + + E  +    IH  + Q+ R + +  F++   R  V TD+F RGIDI+ VN+VIN+D P + ++YLHRVGR+GRFG  GLA+    + ED   L +I++     I ++P  ID   Y
Sbjct:  277 LEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSY 431          

HSP 2 Score: 25.409 bits (54), Expect = 7.833e-25
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 1
Query:    1 QKPYVINLMDE--LTLKGITQYYAFVEERQK 87
            Q P  I + DE  LTL G+ Q+Y  +EE+ K
Sbjct:  252 QNPLEIYVDDETKLTLHGLQQHYVKLEEKAK 282          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_MAIZE8.881e-2737.16Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A9_TOBAC1.156e-2638.51Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF411_TOBAC1.958e-2637.84Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
UAP56_CAEEL4.317e-2639.35Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
IF4A_DICDI5.896e-2638.62Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF414_TOBAC5.896e-2639.19Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
UAP56_DROME7.313e-2639.35ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
IF410_TOBAC2.241e-2539.19Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
SUB2_SCLS16.017e-2537.34ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_SCHPO7.833e-2538.06ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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