BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 502
            K T L  L ++L  N  IIF  +VN  + LA  +  LG+S   +H ++ Q +R    + F++GA   LV TD+  RG+DI  V+VVIN+D P +S+ Y+HRVGR+ R G  G ++ L+T  D     RIE  +G ++++
Sbjct:  272 KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQE 410          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.560e-21
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS------ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            K   L  ++  + I Q+IIFC +    + L  ++ + G+    +  ++  D R  +   FR+G  + L+ T++  RGID++ V +V+NFD P N       ETYLHR+GR+GRFG  GLA N+I  +    L +I+    + IKQ+ P
Sbjct:  325 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSSIKQLDP 472          

HSP 2 Score: 23.483 bits (49), Expect = 3.560e-21
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = 1
Query:    7 PYVINLM-DELTLKGITQYYAFVEERQ 84
            P VI L  +ELTL  I QYY     R+
Sbjct:  297 PNVIKLRKEELTLNNIRQYYVLCGNRK 323          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.560e-21
Identity = 48/146 (32.88%), Postives = 83/146 (56.85%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            K   L  ++  + I Q+IIFC +    + L  ++ + G+    +  ++  + R  +   FR+G  + L+ T++  RGID++ V +V+NFD P       + ETYLHR+GR+GRFG  GLA N+I  ++  +L +I+    + IKQ+
Sbjct:  325 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQL 470          

HSP 2 Score: 26.1794 bits (56), Expect = 3.560e-21
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 1
Query:    7 PYVINLM-DELTLKGITQYYAFVEERQ 84
            P VI L  +ELTL  I QYY   E R+
Sbjct:  297 PNVIKLRKEELTLNNIRQYYVLCEHRK 323          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITY-EDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  LFSK+  NQ+++F N   R + LA  ++  G     I   + QD R       +   CR L+ TDL +RGID + VN+VIN D P++ ETY+HR+GR+GRFG LG+AV    + E+   +  I Q+   ++  +P  I   I
Sbjct:  263 KVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLDLMHLPDPIPPGI 411          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/155 (35.48%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   62 MLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            +L   +  K   L  L+  + I Q++IFC++      LA ++++ G+    +  +M+ + R  V   FR G  + LV T++  RGID++ V+VVINFD P       ++ETYLHR+GR+GRFG  GLAVN++  +   N L RI++    +I+++
Sbjct:  312 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/155 (35.48%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   62 MLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            +L   +  K   L  L+  + I Q++IFC++      LA ++++ G+    +  +M+ + R  V   FR G  + LV T++  RGID++ V+VVINFD P       ++ETYLHR+GR+GRFG  GLAVN++  +   N L RI++    +I+++
Sbjct:  311 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 465          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_ENCCU (ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi GN=TIF1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 2
Query:   74 KKGR------KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            +KGR      K   L  +F K ++ QSI+F NS     ++   +    + C  I A++ Q  R R  + FR G  R L+ + L +RGIDIQ ++VV   D P  +   TY+HR+GRSGR+G  G+A+N++   +  NL  IE+   T IK++P
Sbjct:  267 RKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVYEHELKNLKAIERFYNTTIKELP 419          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 55/155 (35.48%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   62 MLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            +L   +  K   L  L+  + I Q++IFC++      LA ++++ G+    +  +M+ + R  V   FR G  + LV T++  RGID++ V+VVINFD P       ++ETYLHR+GR+GRFG  GLAVN++  +   N L RI++    +I+++
Sbjct:  311 VLCNNREEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 465          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 53/148 (35.81%), Postives = 86/148 (58.11%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS------ETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQIP 508
            K   L  L+S L I  S+IF    +    L +++++ G+    +H+ +  D R+R+  DFR G  + L+ T++  RGIDI  V++V+N+D P +       ETYLHR+GR+GRFG  G++++ +  E  F  L  I+Q LG  + Q+P
Sbjct:  323 KFKMLEELYSMLTIASSVIFVAQRSTANALYQRMSKNGHKVSLLHSDLSVDERDRLMDDFRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETYLHRIGRTGRFGRSGVSISFVHDEASFEVLDSIQQSLGMTLTQVP 470          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.727e-20
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPH-IDQAIY 532
            L +  K+  LN L   L+ NQ IIF  S  R   L K + E  +    +H+      R + F +F    C   V TD+F RGIDI+ +N+ IN+D P ++++YLHRVGR+GRFG  GL+++ + T ED   L  IE+     + + P   +D + Y
Sbjct:  302 LSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRECNFPSIAVHSG-----RYKEFKEFNKRIC---VATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTPEDEQVLKDIEKRFEVALPEYPEEGVDSSTY 449          

HSP 2 Score: 22.7126 bits (47), Expect = 1.727e-20
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:   31 ELTLKGITQYYAFVEERQK 87
            +LTL G+ QYY  + E +K
Sbjct:  289 KLTLHGLQQYYIKLSEAEK 307          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_SCHPO2.564e-2138.85ATP-dependent rRNA helicase rrp3 OS=Schizosaccharo... [more]
DDX25_BOVIN3.560e-2134.46ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DDX25_HUMAN3.560e-2132.88ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]
DDX20_DANRE4.373e-2137.58Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
DD19B_HUMAN9.742e-2135.48ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DD19A_HUMAN9.742e-2135.48ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
IF4A_ENCCU1.662e-2036.60ATP-dependent RNA helicase eIF4A OS=Encephalitozoo... [more]
DD19A_MOUSE1.662e-2035.48ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DBP5_YARLI1.662e-2035.81ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
SUB2_EMENI1.727e-2036.54ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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