BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            ++S  L+ L +  + +  ++F  +    + L   +   GY+C  IH    Q  R    H FR+G    LV T +  RG+DI  V  VINFD P + E Y+HR+GR+GR G+LGLA +    E   N+ +   +L  E KQ  P
Sbjct:  426 KRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVP 567          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            N+ +IF  +    + + + + + G+    IH    Q+ R+ V ++F+ G    +V TD+ +RGID++ +  V N+D+P NSE Y+HR+GR+GR G  G A+ L T +++     +   L TE KQ+
Sbjct:  397 NKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVL-TEAKQV 521          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            N+ +IF  +    + + + + + G+    IH    Q+ R+ V ++F+ G    +V TD+ +RGID++ +  V N+D+P NSE Y+HR+GR+GR G  G A+ L T +++     +   L TE KQ+
Sbjct:  350 NKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVL-TEAKQV 474          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            IIF  S+ R + L  ++     +   IHA+     R+ V   F+NG    L+ TD+  RG+D + VN+VIN+D P++++ Y+HR+GR+GR G  G AV   T ED
Sbjct:  370 IIFLQSITRAKALFHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKED 474          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-QIPP 511
            K   L  L ++    + ++F N  + V  + +++T+ G S   +   + Q  R R    FR G  R LV TD+  RGI I  ++ VINF  P++ + Y+HR+GR+GR G  G +++    +D F L  IE+ LG +I  ++PP
Sbjct:  244 KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPP 386          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAB (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-QIPP 511
            K   L  L ++    + ++F N  + V  + +++T+ G S   +   + Q  R R    FR G  R LV TD+  RGI I  ++ VINF  P++ + Y+HR+GR+GR G  G +++    +D F L  IE+ LG +I  ++PP
Sbjct:  244 KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPP 386          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA8 (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain LESB58) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-QIPP 511
            K   L  L ++    + ++F N  + V  + +++T+ G S   +   + Q  R R    FR G  R LV TD+  RGI I  ++ VINF  P++ + Y+HR+GR+GR G  G +++    +D F L  IE+ LG +I  ++PP
Sbjct:  244 KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPP 386          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            ++F  S  + + L + + +  Y C  +H    Q  R     DF+N  C  L+ T +  RG+D++ + +V+NFD P + E Y+HRVGR+GR G  G AV  I+ +D
Sbjct:  780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 47/144 (32.64%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   77 KGRKSTCLNTLFSKLQ---INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 499
            K  K   L  + S+++   I  ++IF ++    + L+  + EL      +H+   Q  R      F++G    L+ TD+ +RG+DI  V++VIN+D P++   Y+HRVGR+ R G  GLAV++IT  D   +++IE+E+G +++
Sbjct:  283 KDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKME 426          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  131 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT-YEDRFN 460
            Q +IF N     + L ++++   Y C  +H    Q  R+    DF+N     L+ T L +RG+DI+ +N+V+NFD P + E Y+HRVGR+GR G+ G A   IT  E+RF+
Sbjct:  758 QILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFS 868          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX3L_MOUSE7.224e-1634.97Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DBP2_SCLS17.224e-1633.33ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_BOTFB7.224e-1633.33ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
ROK1_LODEL9.435e-1639.05ATP-dependent RNA helicase ROK1 OS=Lodderomyces el... [more]
RHLB_PSEAE9.435e-1633.57ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RHLB_PSEAB9.435e-1633.57ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RHLB_PSEA89.435e-1633.57ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RH42_ARATH9.435e-1635.24DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
RH36_ARATH9.435e-1632.64DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
DDX46_DICDI9.435e-1638.74ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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