BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ-IPPHIDQAIY 532
            ++S  L+ L +  + + +++F  +    + L   + +  Y+C  IH    Q  R    H FR+G    LV T +  RG+DI  V  VINFD P + E Y+HR+GR+GR G+LGLA +    E   N+ +   +L  E KQ +P  ++   Y
Sbjct:  426 KRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNLNITKDLLDLLVEAKQEVPSWLESMAY 575          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 46/152 (30.26%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQIPPH 514
            K   L  L+  + I  S+IF  +      + K++   G+    +H       R+ +  +FR+G  + L+ T++  RGID+ +V++VIN+D P         ++ETYLHR+GR+GRFG +G++++ +     F  L +I Q  G ++ Q+ P+
Sbjct:  301 KYDILCKLYGLMTIGSSVIFVRTRETANEIQKRMEADGHKVSALHGAYEGQSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREPDAETYLHRIGRTGRFGRVGVSISFVHDRRSFEALSQIAQFYGIDLIQLNPN 452          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 41/134 (30.60%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            N+ +IF  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T E+      +   L    +QI P + + +
Sbjct:  367 NKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLVTILTEAKQQIDPRLAEMV 500          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 49/145 (33.79%), Postives = 70/145 (48.28%), Query Frame = 2
Query:   80 GRKSTCLNTLFSKLQINQS---------------------IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            GRK    NT+  KL    S                     IIF  S++R + L  ++     +   IHA+     R  V   F+NG    L+ TD+  RG+D + VN+VIN+D P+ ++ Y+HR+GR+GR G  G AV   T ED
Sbjct:  332 GRKEAASNTIDQKLVFTGSEEGKLLAIRQMIQEGEFKPPIIIFLQSIHRAKALFHELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKED 476          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 499
            IIF N    +E +AK++  +G+    +H    Q+ R R     RN     LV TD+  RGIDI  V++V+N++  K+ E Y HR+GR+GR G  G A+  +  ED    Y +   L    K
Sbjct:  520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAK 640          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 2
Query:   80 GRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            GRK+  L         + +IIF  + N    +++ +   GY+   ++  M Q  R +     +NG    L+ TD+  RG+D+  ++ VIN+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  229 GRKTDALIRFLEAEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEV 370          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX19_DICDI (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum GN=helC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ-DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            K+  L+ ++  + + QSI+F +++   + + +K+ + G+S   ++ K L  + R +   DF++G  + L+ T++  RGIDI  V++VIN+D P       +   YLHR+GR GRFG  G+A++ +  +   N L  I   LG  +K++
Sbjct:  294 KALILSDIYGFISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQSTNKLMNISTHLGVPLKEL 441          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            I+F N     E+L + +  L      +H++M Q  R      FR  A R L+ TD+  RG+DI  V +VIN+D P++ +T++HR GR+ R G  G A++ +T  D   +  IE+ +  ++ +     D A+
Sbjct:  258 IVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSRIEAIEERINKKMDECKKVHDTAV 388          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            N+ ++F  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  VIN+D+P NSE Y+HR+GR+GR G  G A+   T ++      +   L    +QI P + + +
Sbjct:  388 NKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRLAEMV 521          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            IIF  S+ R + L  ++     +   IHA+     R  V   F+NG    L+ TD+  RG+D + VN+VIN+D P++++ Y+HR+GR+GR G  G AV   T ED
Sbjct:  382 IIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKED 486          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX3Y_MOUSE9.435e-1633.11ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DBP5_NEUCR9.435e-1630.26ATP-dependent RNA helicase dbp-5 OS=Neurospora cra... [more]
DBP2_NEOFI9.435e-1630.60ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
ROK1_PICST1.232e-1533.79ATP-dependent RNA helicase ROK1 OS=Pichia stipitis... [more]
PRP28_SCHPO1.232e-1535.54Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DEAD_BUCAI1.232e-1530.28Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DDX19_DICDI1.232e-1531.08ATP-dependent RNA helicase ddx19 OS=Dictyostelium ... [more]
DBP8_VANPO1.232e-1532.06ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma... [more]
DBP2_EMENI1.232e-1529.85ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
ROK1_CANAL1.609e-1539.05ATP-dependent RNA helicase CHR1 OS=Candida albican... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
back to top