BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  131 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            +S+IF       + L +++   GY C  IH    Q  R+    DF+ G    L+ T +  RG+D++ + +V+N+D P + E Y+HR GR+GR G+ G AV  +T E       I + L    +Q+P  + + +
Sbjct:  811 RSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALKQSGQQVPEPVQKMV 943          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 41/132 (31.06%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            N+ +IF  +    + + + + + G+    IH    QD R+ V ++FR G    +V TD+ +RGID++ +  V N+DFP N+E Y+HR+GR+GR G  G A    T ++      +   L    + I P +++
Sbjct:  370 NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEE 501          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            K+ R +  L T  S+ Q ++ IIF ++    + +   +   G+    IH    Q+ R+ V  +FR+G    +V TD+  RGID++ +N VIN+D P N E Y+HR+GR+GR G  G A++  T
Sbjct:  344 KRDRLAKHLETA-SQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFT 465          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            N+ +IF  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T E+      +   L    +QI P +
Sbjct:  369 NKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLVTILTEAKQQIDPRL 498          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP10_USTMA (ATP-dependent RNA helicase DBP10 OS=Ustilago maydis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            +Q+IIFC + + VE L   +T  GY+C +I++ + Q  R      FR G    L+ TD+  RGID+  +  V+NFDFP    T++HRVGR+ R G  G A ++ T
Sbjct:  469 HQTIIFCATKHHVEYLLLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIVTDVAARGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAGRNGWAWSMCT 573          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            S+++ E+   + +  +  K + L  L  +L  NQ    +++F +     + L   + + GY+   IH    Q  R+    D++ G    L+ T +  RG+D++++ +V+N+D P + E Y+HRVGR+GR GH G+AV  IT E       I + L    + +P  +
Sbjct:  633 SVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKEL 798          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 2
Query:   80 GRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            G+K+  L         + +IIF  + N    +++ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D+  ++ VIN+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  229 GKKTDALIRFLEAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEV 370          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP8_MAGGR (ATP-dependent RNA helicase DBP8 OS=Magnaporthe grisea GN=DBP8 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 502
            IIF N  +  + L   +  L +    +H+K+ Q  R      FR  A R LV TD+ +RG+DI  V+VV+N+D P++ + Y+HRVGR+ R G  G AVN +   D   +  IE+ +G  +++
Sbjct:  395 IIFVNRTSTAQFLHHLLRLLDHRVTSLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVNFVGQRDVELVLAIEKRVGRPMEK 516          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_PICGU (ATP-dependent RNA helicase ROK1 OS=Pichia guilliermondii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 454
            IIF  S+ R + L  ++     +   IHA+     R      F+NG    L+ TD+  RG+D + VN+VIN+D P+ S+ Y+HR+GR+GR G  G AV   T ED+
Sbjct:  356 IIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDK 461          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-QIPP 511
            K   L  L ++ +  + ++F N  + V  + +K+   G +   +   + Q  R R    FR G    LV TD+  RGI I  ++ VINF  P++ + Y+HR+GR+GR G  G++++    +D + L  IE  LG +IK ++PP
Sbjct:  244 KYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPP 386          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP5_ASPCL1.609e-1530.83Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DBP2_SCHPO1.609e-1531.06ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
DBP2_KLULA1.609e-1535.77ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_ASPFU1.609e-1531.54ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]
DBP10_USTMA1.609e-1540.00ATP-dependent RNA helicase DBP10 OS=Ustilago maydi... [more]
PRP11_SCHPO2.102e-1528.31Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DEAD_BUCBP2.102e-1528.87Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP8_MAGGR2.102e-1536.07ATP-dependent RNA helicase DBP8 OS=Magnaporthe gri... [more]
ROK1_PICGU2.745e-1538.68ATP-dependent RNA helicase ROK1 OS=Pichia guillier... [more]
RHLB_PSEPK2.745e-1532.17ATP-dependent RNA helicase rhlB OS=Pseudomonas put... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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