BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_ENT38 (ATP-dependent RNA helicase rhlB OS=Enterobacter sp. (strain 638) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 502
            K   L TL  +   +++IIF N+ +R E +   +   G+    +   + Q  R R+  DF  G    LV TD+  RG+ I AV  V N+D P + E Y+HR+GR+GR G  G +++L   E   NL  IE  +G  + Q
Sbjct:  243 KMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLTAIETYIGHSVPQ 381          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_GIBZE (ATP-dependent RNA helicase DBP5 OS=Gibberella zeae GN=DBP5 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 44/149 (29.53%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            K   L  L+  + I QS+IF  + +    + +++   G+    +HA      R+ +   FR G  + L+ T++  RGID+ +V++VIN+D P         ++ETYLHR+GR+GRFG +G++++ +  +  F+ L +I +  G ++ ++
Sbjct:  302 KYDILCKLYGLMTIGQSVIFVKTRDSASEIERRMVADGHKVSALHAAFDGAERDNLLTKFRQGENKVLITTNVLARGIDVSSVSMVINYDIPMKGRGDTEPDAETYLHRIGRTGRFGRVGVSISFVYDKKSFDALSKIAEMYGIDLVKL 450          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_COCIM (ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 43/152 (28.29%), Postives = 84/152 (55.26%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR-IEQELGTEIKQI 505
            K   L   +  L I  SIIF  +      + +++   G++   +   +    R+ +   FRNG  + L+ T++  RGID+  V++VIN+D P+           +++TYLHR+GR+GRFG +G+AV+ ++ ++ + + + I++   T I+++
Sbjct:  321 KYEILVKFYGLLTIGSSIIFVKTRASAAEIERRMVAEGHTVVSLTGGIEGQKRDEIIDRFRNGTAKVLITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMADAQTYLHRIGRTGRFGRVGVAVSFVSNQEEWQMLQDIQKYFSTNIERV 472          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            N+ +IF  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T ++      +   L    +QI P + + +
Sbjct:  378 NKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEMV 511          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            N+ +IF  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T ++      +   L    +QI P + + +
Sbjct:  385 NKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEMV 518          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  107 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            L SK   ++ IIFC++    + L++ +T   +    IH    Q  R+ V   FR G    LV TD+  RG+DI+ + VVIN+DFP   E Y+HR+GR+GR G  GLA    + +D
Sbjct:  384 LRSKEPGSKIIIFCSTKKMCDQLSRNLTR-NFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQD 497          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = 2
Query:   65 LLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 478
            L +    K   L  L ++     +I+F  +VN  + ++  +  L +    +H ++ Q  R    + F+  +   LV TD+  RG+DI  V++VINFD P++S TY+HRVGR+ R G  G A+++IT  D     RIE+
Sbjct:  330 LFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEK 467          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  110 FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            + K Q N+ ++F       E L + + + G+    IH    Q  R R    F+ G+C  LV TD+  RG+DI  V VVIN+ FP  +E Y+HR+GR+GR G  G+A    T
Sbjct:  361 YHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN--GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 484
            N+ ++FCN++N    +   +TE   S    H ++  + R    + FRN  G C  LVCTDL  RG+D+  V+ VI FDFP NS  YLHR GR+ R G  G   +L+  +D     RIE+ +
Sbjct:  369 NKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLD-VDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAM 488          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 51/131 (38.93%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   80 GRKS------TCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 454
            GRKS        L +L ++   +Q++IF  S      L      LG S   +H  + Q+ R     DFR+G    L+ TDL +RG+DI+ V  VIN+D P   E YLHRVGR+ R G  G AV L+   DR
Sbjct:  590 GRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADR 720          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ENT382.745e-1534.53ATP-dependent RNA helicase rhlB OS=Enterobacter sp... [more]
DBP5_GIBZE2.745e-1529.53ATP-dependent RNA helicase DBP5 OS=Gibberella zeae... [more]
DBP5_COCIM2.745e-1528.29ATP-dependent RNA helicase DBP5 OS=Coccidioides im... [more]
DBP2_ASPOR2.745e-1529.85ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DBP2_ASPNC2.745e-1529.85ATP-dependent RNA helicase dbp2 OS=Aspergillus nig... [more]
DB10_NICSY2.745e-1539.13ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RRP3_MAGGR3.585e-1533.33ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
RH5_ARATH3.585e-1537.84DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
RH39_ORYSJ3.585e-1538.84DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
DRS1_USTMA3.585e-1538.93ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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