BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_ASPCL (ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 43/152 (28.29%), Postives = 85/152 (55.92%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            K   L  L+  L +  SIIF  +      + K++   G++   +   +    R+ +   FR+G  + L+ T++  RGID+  V++VIN+D P+           + +TYLHR+GR+GRFG +G++++ ++  + ++ L +I++   TEI+++
Sbjct:  308 KYKTLVQLYGLLTVGSSIIFVQTRTSASEIEKRMVAEGHTVASLTGGIDVTKRDEIIDKFRSGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWDMLNQIQRYFNTEIQRV 459          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            IIF  S+ R + L  ++     +   IHA+     R+ V   F++G    L+ TD+  RG+D + VN+VIN+D P++++ Y+HR+GR+GR G  G AV   T ED
Sbjct:  365 IIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKED 469          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata GN=ROK1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            IIF  S+ R + L  ++     +   IHA+     R ++   F+ G    L+CTD+  RGID + VN+VIN+D P  ++ Y+HR+GR+GR G  G AV L T  D
Sbjct:  378 IIFLESIARAKALYHELMYDRINVDVIHAERTAIQREKIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPTTAQAYVHRIGRTGRGGRSGKAVTLYTKLD 482          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_SODGM (ATP-dependent RNA helicase rhlB OS=Sodalis glossinidius (strain morsitans) GN=rhlB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI 496
            K   L TL  +   ++ IIF N+ +R E +   +   G+    +   + Q  R R+   F  GA   LV TD+  RG+ I +V  V N+D P + E Y+HR+GR+GR G  G +++L   E   NL  IE  +G +I
Sbjct:  243 KMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGALDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEEYALNLTAIESYIGHQI 379          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  131 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            +S+IF +     + L +++   GY C  IH    Q  R+    DF+ G    L+ T +  RG+D++ + +V+N+D P + E Y+HR GR+GR G+ G AV  +T +      R   ++   +KQ    + +A+
Sbjct:  795 RSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE----RYSVDIAKALKQSGQEVPEAV 923          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  107 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 454
            L  +L   ++IIF  S      +      L  +   IH  + Q+ R R   DFR+G C  L+ TD+ +RGIDI+ + VVIN++ P   E YLHRVGR+ R G  G A+ L    DR
Sbjct:  498 LCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDR 613          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 2
Query:   80 GRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            GRK+  L         + +IIF  + N    +++ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D+  ++ VIN+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  229 GRKTDALIRFLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEV 370          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++I+F  +  R + L +K+   G+    IH    Q  R+ V ++F++G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R    G A    T
Sbjct:  342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++I+F  +  R + L +K+   G+    IH    Q  R+ V ++F++G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R    G A    T
Sbjct:  342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++I+F  +  R + L +K+   G+    IH    Q  R+ V ++F++G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R    G A    T
Sbjct:  342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_ASPCL3.585e-1528.29ATP-dependent RNA helicase dbp5 OS=Aspergillus cla... [more]
ROK1_DEBHA4.683e-1538.10ATP-dependent RNA helicase ROK1 OS=Debaryomyces ha... [more]
ROK1_CANGA4.683e-1539.05ATP-dependent RNA helicase ROK1 OS=Candida glabrat... [more]
RHLB_SODGM4.683e-1534.31ATP-dependent RNA helicase rhlB OS=Sodalis glossin... [more]
PRP5_EMENI4.683e-1530.08Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_SCHPO4.683e-1538.79ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DEAD_BUCAP4.683e-1529.58Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DDX5_PONAB4.683e-1535.24Probable ATP-dependent RNA helicase DDX5 OS=Pongo ... [more]
DDX5_PANTR4.683e-1535.24Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DDX5_MOUSE4.683e-1535.24Probable ATP-dependent RNA helicase DDX5 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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