BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++I+F  +  R + L +K+   G+    IH    Q  R+ V ++F++G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R    G A    T
Sbjct:  342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            +IF  S  R   L +++   G +   IH++  Q  R+ +   FR G    L+CT+L  RG+D + VN VINFDFP    +Y+HR+GR+GR G  G+A  L T  D
Sbjct:  444 LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDAD 548          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++IIF  +  R + L +++   G+    IH    Q  R+ V ++FR+G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R  + G A    T
Sbjct:  340 NKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++IIF  +  R + L +++   G+    IH    Q  R+ V ++FR+G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R  + G A    T
Sbjct:  340 NKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 499
            +IFCN     + L   +  L +    +H+K+ Q  R      FR  A R LV TD+  RG+DI  V +VIN+D P++ + Y+HRVGR+ R G  G AV+ +   D   +  IE  +G +++
Sbjct:  375 VIFCNRTATADYLTHLLRLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIENRVGRQME 495          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 47/153 (30.72%), Postives = 86/153 (56.21%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNS-VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR-IEQELGTEIKQI 505
            K   L   +  L I  SIIF  +  + VE+  + + E G++   +   +    R+ +   FR G  + L+ T++  RGID+Q V++VIN+D P+           +++TYLHR+GR+GRFG +G+AV+ +  ++ + + + I+    TEI+++
Sbjct:  318 KFDILVKFYGLLTIGSSIIFVKTRASAVEIERRMVAE-GHTVVSLTGGVEGQKRDEIIDKFRQGDAKVLITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSFVASKEEWQMLQDIKTYFNTEIQRV 469          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 40/127 (31.50%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            +IF  +    + + + + + G+    IH    Q+ R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+ L T ++      +   L    +QI P +
Sbjct:  376 LIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVNILTESKQQIDPRL 502          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            N+ +IF  +    + + + + + G+    IH    Q  R+ V ++F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T ++      +   L    +QI P + + +
Sbjct:  373 NKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEMV 506          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            +IF   + R + L  ++         IH ++ Q  R      FR G    L+ TDL  RGID   V +VINFDFP++  +Y+HR+GR+GR G+ G AV   T ED
Sbjct:  292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            +IFC +    + LA+ +T   +    IH    Q  R +V   FR+G    LV TD+  RG+DI+ + VVIN+DFP   E Y+HR+GR+GR G  G+A      +D
Sbjct:  399 LIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQD 502          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX5_HUMAN4.683e-1535.24Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]
DDX52_DICDI4.683e-1540.00Probable ATP-dependent RNA helicase ddx52 OS=Dicty... [more]
DDX17_MOUSE4.683e-1536.19Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN4.683e-1536.19Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DBP8_BOTFB4.683e-1535.54ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
DBP5_AJECN4.683e-1530.72ATP-dependent RNA helicase DBP5 OS=Ajellomyces cap... [more]
DBP2_COCIM4.683e-1531.50ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_ASPCL4.683e-1529.85ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
ROK1_SCHPO6.116e-1539.05ATP-dependent RNA helicase rok1 OS=Schizosaccharom... [more]
RH40_ORYSJ6.116e-1539.05DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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