BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = 2
Query:   98 LNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED-RF--NLYRIEQELGTEIKQIPPHIDQAI 529
            L TL  +L     I IF  +    + + +++   G+    IH    Q  R+RV  +F++G    +  TD+  RG+D++ +  V+N+DFP   E Y+HR+GR+GR G  G+A    T+++ +F   L +I QE G   + +PP +   +
Sbjct:  400 LLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAG---QVVPPTLSALV 544          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            IIFC++    + L + +T   +    IH    Q  R+ V + FR+G    LV TD+  RG+D++ +  V+N+DFP   E Y+HR+GR+GR G  G A      +D  +   + + L    +++PP I
Sbjct:  407 IIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQI 532          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP28_PHANO (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL-GTEIKQIP 508
            I+F N     + +A+ I  +G+S   +H    Q+ R       R      LV TDL  RGIDI  V++V+NF+   + E+Y HR+GR+GR G  G+A+     ED   LY ++Q L  ++I ++P
Sbjct:  599 IVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFWGNEDADVLYDLKQMLTKSQISKVP 723          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            RK+  L         + +IIF  + N    +A+ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D++ +++V+N+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            RK+  L         + +IIF  + N    +A+ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D++ +++V+N+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            RK+  L         + +IIF  + N    +A+ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D++ +++V+N+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            RK+  L         + +IIF  + N    +A+ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D++ +++V+N+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/141 (29.08%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            RK+  L         + +IIF  + N    +A+ +   GY+   ++  M Q  R +     ++G    L+ TD+  RG+D++ +++V+N+D P +SE+Y+HR+GR+GR G  G A+  +   +R  L  IE+ +   I ++
Sbjct:  231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 442
            N++I+F  +  R + L +K+   G+    IH    Q  R  V ++F++G    L+ TD+ +RG+D++ V  VIN+D+P +SE Y+HR+GR+ R    G A    T
Sbjct:  342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  107 LFSKLQINQS-IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 502
            L + L + +S IIFCN      LL   +  L +    +H+ + Q  R      FR  A R LV TD+  RG+DI  V +V+NFD P++ + Y+HRVGR+ R G  G +V  I   D   +  IE+ +G ++ +
Sbjct:  324 LLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQRDVELVLAIEERVGGKMSE 456          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH30_ARATH6.116e-1531.08DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
RH14_ARATH6.116e-1533.07DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
PRP28_PHANO6.116e-1535.20Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DEAD_SHIFL6.116e-1529.08Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_KLEPN6.116e-1529.08Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
DEAD_ECOLI6.116e-1529.08Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL66.116e-1529.08Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO576.116e-1529.08Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DDX5_MACFA6.116e-1535.24Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]
DBP8_PHANO6.116e-1535.34ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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