BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRV-ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            KKG+    L T+ ++   N  +I   S  RV + L K + + G+    IH    Q  R+ V  +F++G    +V T + +RG+D++ ++ VIN+DFP N+E Y+H++GR+GR G  G A    T E+  +   +   L    ++IP  I++
Sbjct:  361 KKGKLIGHLETISAE---NGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGILREAKQEIPREIEE 508          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            N+ +IF  +    + + + + + G+    IH    Q+ R+ V   F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T ++      +   L    +QI P +
Sbjct:  382 NKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARELVGVLQEAKQQIDPRL 511          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            N+ +IF  +    + + + + + G+    IH    Q+ R+ V   F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T E+
Sbjct:  375 NKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 482          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 41/124 (33.06%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            I+F  +    + LA  + +  Y C  +H  + Q  R R    FR+G    LV TD+  RG+D+  V++VI+++ P N+ET++HR GR+GR G  G A+ +   +    +  IE+E+G+   ++P
Sbjct:  365 IVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELP 487          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            +IF  S  R + L K++         IHA + ++ R     + R G    L+ T++  RG+D + VN VIN+DFP+++  Y+HR+GRSGR G  G A+   T ED+  L  I   L +   ++P  I
Sbjct:  389 LIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVLISSGCEVPSWI 515          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 39/133 (29.32%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  131 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            +++IF       + L +++   GY C  IH    Q  R+    DF+ G    L+ T +  RG+D++ + +V+N+D P + E Y+HR GR+GR G+ G AV  +T +       I + L    +++P  + Q +
Sbjct:  803 RALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERFSVDIAKALKQSGQKVPEPVQQMV 935          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 44/152 (28.95%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            K   L  L+  L +  SIIF  +    + + K++   G++   +   +    R+ V   FR G  + L+ T++  RGID+  V++VIN+D P+           + +TYLHR+GR+GRFG +G++++ ++  + +  L +I++   T I++I
Sbjct:  305 KYQTLVNLYGLLTVGSSIIFVKTRASAQEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQRYFNTNIQRI 456          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 2
Query:   83 RKSTCLNTLFSKLQINQSIIFCNSVNRV-ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            ++S  L+ L    Q N  ++   +  RV + L K +   G+    IH    Q  R+ V  +F++G    ++ TD+ +RG+D++ +  VIN+DFP N E Y+HR+GR+GR G  G +    T ++      + Q L      IPP +++
Sbjct:  341 KRSKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEE 488          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  128 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHID 520
            N+ +IF  +    + + + + + G+    IH    Q+ R+ V   F+ G    +V TD+ +RGID++ +  V+N+D+P NSE Y+HR+GR+GR G  G A+   T ++     +  ++L   +++   HID
Sbjct:  386 NKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNS----KQARDLVGVLQEAKQHID 512          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 499
            +IF       + L K++ + GY C  IH    Q  R++   DF++G    L+ T +  RG+D++ + +V+N+D P + E Y+HRVGR+GR G  G A+  +  +      R+  E+   IK
Sbjct:  668 LIFVERQESADSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQE----RLAAEISRAIK 784          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_USTMA7.988e-1531.79ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
DBP2_NEUCR7.988e-1530.77ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
DBP2_MAGGR7.988e-1534.26ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
RH9_ARATH1.043e-1433.06DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH57_ORYSJ1.043e-1434.65DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sa... [more]
PRP5_ASPTN1.043e-1429.32Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DBP5_ASPNC1.043e-1428.95ATP-dependent RNA helicase dbp5 OS=Aspergillus nig... [more]
DBP2_CRYNE1.043e-1430.41ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
DBP2_CHAGB1.043e-1430.53ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
PRP5_YARLI1.362e-1432.23Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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