BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 46/137 (33.58%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  107 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            LF  ++I +SIIF N+ +  + L +KI   GY+   IH  + Q  R++   +F++G+ R L+ TDL  RGID+      I +D P     YL  V +SG+ G  G+A++ IT  D      I++   T+I+++P ++
Sbjct:  279 LFDTMEITRSIIFVNTRHHAKSLTEKIRGKGYTVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCYLRHV-QSGQHGRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNV 412          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  122 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLI 439
            Q N+ ++F +       L   +  LG     +H  + Q+ R +   DFR+ A   L+CTDL  RG+DI  + +VINFD PK  E YLHRVGR+ R G  G ++  +
Sbjct:  446 QQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFV 551          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX54_MOUSE (ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 48/162 (29.63%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            S L+ +L  + LL+++  K+  L  L   +    +Q+++F  + +  E L + +   G SC +I++ + Q  R      F +  C  L+ TDL  RG+DI  ++ VIN+ FP   + +LHRVGR  R G  G A +L+  ++   L  +   LG  +    P
Sbjct:  304 SKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARP 465          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 2
Query:   44 RELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            R++  T+L + +  K   L  +   +   ++++F  +  + + +A  + +   S   IH    Q  R +   DFR G C  LV T +  RG+DI+ V  VINFD P   + Y+HR+GR+GR G+ G A++    E   +L +   ++ T+ +Q  P
Sbjct:  514 RDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVP 669          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 2
Query:   44 RELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            R++  T+L + +  K   L  +   +   ++++F  +  + + +A  + +   S   IH    Q  R +   DFR G C  LV T +  RG+DI+ V  VINFD P   + Y+HR+GR+GR G+ G A++    E   +L +   ++ T+ +Q  P
Sbjct:  513 RDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVP 668          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 2
Query:  101 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            N L   L     +IF ++   VE L+  +T+ G+    +H    Q  R++    F+ G    L+ TD+  RG+DI  +  V+N+D  ++ E++ HR+GR+GR G+ G+A  LIT +D      + + L +  + +PP +
Sbjct:  542 NQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPEL 680          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 42/152 (27.63%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELGTEIKQI 505
            K   L  L+  L +  SIIF  +    + + +++T  G++   +  +     R+ +   FR G  + L+ T++  RGID+  V++VIN+D P+           + +TYLHR+GR+GRFG +G++++ ++  + +  L +I+     EI+++
Sbjct:  308 KYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQTYFNCEIQRV 459          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 454
            ++FC        + + ++  G     IH  + QD R R    F++G    LV TD+  RG+DI  V +VIN  FP   E Y+HR+GR+GR G LG A+ L T  D+
Sbjct:  454 LVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDK 559          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_SHIF8 (ATP-dependent RNA helicase rhlB OS=Shigella flexneri serotype 5b (strain 8401) GN=rhlB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI 496
            K   L TL  +   +++IIF N+ +R E +   +   G+    +   + Q  R R+  +F  G    LV TD+  RG+ I AV  V N+D P + E Y+HR+GR+GR G  G +++L   E   NL  IE  +G  I
Sbjct:  243 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIENYIGHSI 379          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RHLB_PSESM (ATP-dependent RNA helicase rhlB OS=Pseudomonas syringae pv. tomato GN=rhlB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 43/133 (32.33%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK-QIPP-HIDQAI 529
            ++F N  + V  + +++   G +   +   + Q  R +    FR G  R LV TD+  RGI I  ++ VINF  P+  + Y+HR+GR+GR G  G++++    +D + L  IE++LG +I  + PP H+ +A+
Sbjct:  260 MVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAV 392          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_ORYSJ1.362e-1433.58Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]
DRS1_PICGU1.362e-1437.74ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DDX54_MOUSE1.362e-1429.63ATP-dependent RNA helicase DDX54 OS=Mus musculus G... [more]
DDX4_MACFA1.362e-1429.49Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DDX4_HUMAN1.362e-1429.49Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DDX42_DICDI1.362e-1430.22Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
DBP5_ASPFU1.362e-1427.63ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DBP3_NEUCR1.362e-1437.74ATP-dependent RNA helicase dbp-3 OS=Neurospora cra... [more]
RHLB_SHIF81.779e-1434.31ATP-dependent RNA helicase rhlB OS=Shigella flexne... [more]
RHLB_PSESM1.779e-1432.33ATP-dependent RNA helicase rhlB OS=Pseudomonas syr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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