BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 38/124 (30.65%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            I+F  +    + L+  +    + C  +H  + Q  R R    FR+G    LV TD+  RG+D+  V+++I+++ P N+ET++HR GR+GR G  G A+ + + +    +  IE+E+G+   ++P
Sbjct:  353 IVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELP 475          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  113 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 511
            SKLQ   +++F  +    + L   +   G+    IH    Q  R      F+ G    +V TD+ +RG+D+  V  VIN+D PK+ E Y+HR+GR+GR G  G A    T  D  +L +   EL TE KQ  P
Sbjct:  347 SKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDH-SLAKGLLELMTEAKQDVP 478          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQ---INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEI 496
            K   L  L SK+    I   I+F ++    + L   + ELG+    +H+   Q  R    H+F++     L+ TD+ +RG+DIQ V++VIN+D P+    Y+HRVGR+ R    GL+++ IT + D   L+ IE  +G ++
Sbjct:  305 KELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQL 445          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP5_ASPNC (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 38/133 (28.57%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  131 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            +++IF +     + L +++   GY C  IH    Q  R+    DF+ G    L+ T +  RG+D++ + +V+N+D P + E Y+HR GR+GR G+ G AV  +T +       I + L    +++P  + + +
Sbjct:  801 RALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQKVPEPVQKLV 933          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY--RIEQELGTEIKQIP 508
            I+F N     +++ K + + G S   +H+   Q+ R       R+G    LV TDL  RGID+  V++VIN+      E Y+HR+GR+GR G  G+A+  +T +D   +Y  RIE E     K  P
Sbjct:  588 IVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNP 713          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            ++F       E LA  + + G++   +H  M Q  RN+V  DF+      LV TD+  RG+DI ++  VIN+D  ++ +T+ HR+GR+GR G  G+A  L+T +D
Sbjct:  502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            ++F       E LA  + + G++   +H  M Q  RN+V  DF+      LV TD+  RG+DI ++  VIN+D  ++ +T+ HR+GR+GR G  G+A  L+T +D
Sbjct:  502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  137 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            ++F       E LA  + + G++   +H  M Q  RN+V  DF+      LV TD+  RG+DI ++  VIN+D  ++ +T+ HR+GR+GR G  G+A  L+T +D
Sbjct:  502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 2
Query:   41 SRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 451
            ++++    +L ++  K   L  L  + +  + ++FC      + L +++   GY    IH    Q  R  +   FR      LV TD+  RG+DI+ +  VIN+DFP   + Y+HR+GR+GR G  G  V LIT ++
Sbjct:  317 NKDVTQRFILTQEFAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKE 453          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DBP3_CHAGB (ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 2
Query:   68 LLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 454
            LLK+ +K +  N        ++ ++FC        + + +   G     IH  + QD R R    F+ G    LV TD+  RG+DI  V +VIN  FP   E Y+HR+GR+GR G  G A+ L T  D+
Sbjct:  441 LLKEAQKGSAKN--------DRILVFCLYKKEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLFTEHDK 561          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH53_ARATH1.779e-1430.65DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH52A_ORYSJ1.779e-1435.34DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH36_ORYSJ1.779e-1433.33DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
PRP5_ASPNC1.779e-1428.57Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_CRYNE1.779e-1434.92Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX42_PONAB1.779e-1436.19ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX42_MOUSE1.779e-1436.19ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
DDX42_HUMAN1.779e-1436.19ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX17_TRYBB1.779e-1430.66Putative DEAD-box RNA helicase HEL64 OS=Trypanosom... [more]
DBP3_CHAGB1.779e-1434.11ATP-dependent RNA helicase DBP3 OS=Chaetomium glob... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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