BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.671e-31
Identity = 65/149 (43.62%), Postives = 96/149 (64.43%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHID 520
            K+  K   L  L+  L I Q +IFCN+  +V+ L+ K+ +  ++   IH  M QD R++V  DFR+G+ R L+ TD++ RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT E+   L  IE+    +IK +P  ID
Sbjct:  247 KEEWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLKSIEKHYSIKIKPMPADID 395          

HSP 2 Score: 22.3274 bits (46), Expect = 8.671e-31
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DE++L+GI QY+  V++ +
Sbjct:  231 DEVSLEGIKQYHINVDKEE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.129e-30
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  246 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397          

HSP 2 Score: 26.9498 bits (58), Expect = 1.129e-30
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  230 DELTLEGIKQFYIAVEKEE 248          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.129e-30
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  245 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396          

HSP 2 Score: 26.9498 bits (58), Expect = 1.129e-30
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  229 DELTLEGIKQFYIAVEKEE 247          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.470e-30
Identity = 62/148 (41.89%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IE    T+I ++P ++
Sbjct:  247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNV 394          

HSP 2 Score: 26.1794 bits (56), Expect = 1.470e-30
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+G+ QY+  VE+ +
Sbjct:  231 DELTLEGLKQYFIAVEKEE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.470e-30
Identity = 60/148 (40.54%), Postives = 92/148 (62.16%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K   L  L+  + ++Q++IFCN+  +V+ L + +TE  ++   +H +  Q  R+ +   FR G+ R L+ TDL  RGID+Q V++VINFD P N E Y+HR+GR GRFG  G+A+N +T ED   L  +E+   TEI ++P +I   I
Sbjct:  248 KFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFYSTEIVEMPTNIADLI 395          

HSP 2 Score: 26.1794 bits (56), Expect = 1.470e-30
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  228 DELTLEGIKQFYIDVEQ 244          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.914e-30
Identity = 61/145 (42.07%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  L+  L I Q +IFCN+  +V+ L+ K+T+  ++   +H  M Q+ RN+V  DFR+G  R L+ TD++ RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT  D   +  IE+    +I  +P
Sbjct:  248 KEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMKEIEKYYRIKISPVP 392          

HSP 2 Score: 25.409 bits (54), Expect = 1.914e-30
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DE++L+GI QYY  VE+
Sbjct:  232 DEISLEGIKQYYVNVEK 248          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.915e-30
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  245 KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396          

HSP 2 Score: 26.1794 bits (56), Expect = 1.915e-30
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  229 DELTLEGIKQFYIAVEK 245          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.488e-30
Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IE    T+I ++P
Sbjct:  247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMP 391          

HSP 2 Score: 26.1794 bits (56), Expect = 2.488e-30
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+G+ QY+  VE+ +
Sbjct:  231 DELTLEGLKQYFIAVEKEE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.493e-30
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H  M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IE    T+I ++P ++   I
Sbjct:  248 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLI 399          

HSP 2 Score: 25.409 bits (54), Expect = 2.493e-30
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+G+ QY+  VE+
Sbjct:  232 DELTLEGLKQYFIAVEK 248          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.493e-30
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H  M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IE    T+I ++P ++   I
Sbjct:  249 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIELYYSTQIDEMPMNVADLI 400          

HSP 2 Score: 25.409 bits (54), Expect = 2.493e-30
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+G+ QY+  VE+
Sbjct:  233 DELTLEGLKQYFIAVEK 249          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASHGO8.671e-3143.62ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_NEUCR1.129e-3039.47ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
IF4A_MAGGR1.129e-3039.47ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
FAL1_COCIM1.470e-3041.89ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
IF4A_YARLI1.470e-3040.54ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
FAL1_VANPO1.914e-3042.07ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A_PHANO1.915e-3039.47ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
FAL1_AJECN2.488e-3042.76ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
FAL1_NEUCR2.493e-3041.45ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_GIBZE2.493e-3041.45ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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