BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.503e-30
Identity = 58/144 (40.28%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K   L  L+  L I Q++IFCN+  +V+ L +++ +  ++   +H  M Q  R+ + ++FR+G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N  T +D   L  IEQ   T+I ++P ++
Sbjct:  250 KFDTLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNV 393          

HSP 2 Score: 26.5646 bits (57), Expect = 5.503e-30
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+G+ QY+  VE+ +
Sbjct:  230 DELTLEGLKQYFIAVEQEE 248          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.162e-30
Identity = 61/152 (40.13%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R  +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   L  IEQ   T+I ++P ++   I
Sbjct:  260 KEDWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIEQFYSTQIDEMPLNVADLI 411          

HSP 2 Score: 26.5646 bits (57), Expect = 7.162e-30
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  244 DELTLEGIKQFYVAVEK 260          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.163e-30
Identity = 59/148 (39.86%), Postives = 95/148 (64.19%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++
Sbjct:  247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNV 394          

HSP 2 Score: 24.6386 bits (52), Expect = 7.163e-30
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:   31 ELTLKGITQYYAFVEERQ 84
            ELTL+GI Q+Y  VE+ +
Sbjct:  232 ELTLEGIKQFYIAVEKEE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.164e-30
Identity = 61/141 (43.26%), Postives = 92/141 (65.25%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 508
            K   L  L+  L I Q+II+CN+  RV+ L K++ E  ++C  +H  M Q  R  +   FR+G+ R L+ TDL  RGID+Q V++VIN+D P + ETY+HR+GRSGRFG  G+++N +T +D   L  IE+   T+I+++P
Sbjct:  257 KMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERHYNTQIEEMP 397          

HSP 2 Score: 24.6386 bits (52), Expect = 7.164e-30
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            +ELTL+GI Q+Y  VE+
Sbjct:  237 EELTLEGIRQFYVGVEK 253          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.165e-30
Identity = 59/152 (38.82%), Postives = 97/152 (63.82%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L+ L+  + I Q++IFCN+  +V+ L  K+    ++   +H +M Q+ R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          

HSP 2 Score: 24.6386 bits (52), Expect = 7.165e-30
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:   31 ELTLKGITQYYAFVEERQ 84
            ELTL+GI Q+Y  VE+ +
Sbjct:  232 ELTLEGIKQFYIAVEKEE 249          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.583e-29
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K+  K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H  M Q  R+ +  DFR    R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IE    T+I ++P ++
Sbjct:  222 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILRDIELYYSTQIDEMPMNV 369          

HSP 2 Score: 25.7942 bits (55), Expect = 1.583e-29
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+G+ QY+  +E+ +
Sbjct:  206 DELTLEGLKQYFIAIEKEE 224          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 66/167 (39.52%), Postives = 102/167 (61.08%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            SL    +    + +++  K   L  L+  + I QS+IF N+  +V+ +A+K+ +  ++   +HA+M +  R RV + FR+G+ R LV TDL  RGID+  VN+VINFD P N E YLHR+GR GR+G  G+A+N +T +D   L+ IE    T+I ++P  +D A Y
Sbjct:  236 SLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELP--VDFAAY 400          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 66/167 (39.52%), Postives = 102/167 (61.08%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            SL    +    + +++  K   L  L+  + I QS+IF N+  +V+ +A+K+ +  ++   +HA+M +  R RV + FR+G+ R LV TDL  RGID+  VN+VINFD P N E YLHR+GR GR+G  G+A+N +T +D   L+ IE    T+I ++P  +D A Y
Sbjct:  236 SLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELP--VDFAAY 400          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 66/167 (39.52%), Postives = 102/167 (61.08%), Query Frame = 2
Query:   32 SLLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            SL    +    + +++  K   L  L+  + I QS+IF N+  +V+ +A+K+ +  ++   +HA+M +  R RV + FR+G+ R LV TDL  RGID+  VN+VINFD P N E YLHR+GR GR+G  G+A+N +T +D   L+ IE    T+I ++P  +D A Y
Sbjct:  236 SLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEGHYHTQIDELP--VDFAAY 400          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 62/149 (41.61%), Postives = 96/149 (64.43%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHID 520
            K+  K   L  L+  L I Q++IFCN+  +V  L  ++ +  ++   +H  M QD R+ + +DFR G  R L+ TD++ RGID+Q V++VIN+D P + E Y+HR+GRSGRFG  G+A+NLIT ED   L   E+   T+I+++P +I+
Sbjct:  248 KEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNIN 396          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_YARLI5.503e-3040.28ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
IF4A_USTMA7.162e-3040.13ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_ASPFU7.163e-3039.86ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_CRYPV7.164e-3043.26Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_COCIM7.165e-3038.82ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
FAL1_PHANO1.583e-2941.22ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
IF4A_LEIMA1.958e-2939.52Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN1.958e-2939.52Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIBR2.558e-2939.52Probable eukaryotic initiation factor 4A OS=Leishm... [more]
FAL1_PICST2.558e-2941.61ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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