BQ623626

Overview
NameBQ623626
Unique NameBQ623626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:57..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 439
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 439
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGD 454
            K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 82/114 (71.93%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH  LLPKK G  K
Sbjct:   13 AKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSK 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.817e-38
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGD 454
            K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   13 KAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.817e-38
Identity = 82/114 (71.93%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126          
The following BLAST results are available for this feature:
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A3_ORYSJ2.238e-3873.87Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI2.238e-3873.87Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A_CHLRE2.923e-3871.05Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A7_WHEAT2.923e-3871.93Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A7_ORYSJ2.923e-3871.93Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI2.923e-3871.93Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A1_ORYSJ2.923e-3871.93Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI2.923e-3871.93Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A4_VOLCA3.817e-3871.05Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A1_ARATH3.817e-3871.93Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00717 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00717 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623626 ID=BQ623626; Name=BQ623626; organism=Citrus sinensis; type=EST; length=625bp
ACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTTTTTCTG
TAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAG
CCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTT
CCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGC
GAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTC
GCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAA
GAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGG
AATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTA
CCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGG
TGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATT
TTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTATGAGTTT
TTTTCTTATGGTACAGAGATTGCATTTGCTAATCTTTTTCACTATGTGTA
ACTTAATGAGATTATTCCATTGCTT
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