BQ623626

Overview
NameBQ623626
Unique NameBQ623626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 2 
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 2 
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 2 
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 70/111 (63.06%), Postives = 78/111 (70.27%), Query Frame = 2 
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            +K+ SRS +AGLQFPVGR+ RFL+ G YAERVGAGAP                  GNAARDNKK RI PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAK 122
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 72/123 (58.54%), Postives = 87/123 (70.73%), Query Frame = 2 
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            +SK VSRS +AGLQFPVGRI+RFLK G+Y+ER+G GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   16 SSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 68/109 (62.39%), Postives = 79/109 (72.48%), Query Frame = 2 
Query:  116 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            S SRS KAGL FPVGR+ RFL+ G YA+R+G+ AP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK GK
Sbjct:   18 SNSRSSKAGLTFPVGRVHRFLRNGNYAQRIGSSAPVYLASVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPKKSGK 126
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 2 
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 433
            KSV++S KAGLQFPVGRI R+LK G+YA+RVG+GAP                  GNAARDNKK+RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 433
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.189e-31
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 433
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.553e-31
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 2 
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            +  S SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK  K
Sbjct:   13 SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124
The following BLAST results are available for this feature:
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_DROME1.189e-3163.64Histone H2A OS=Drosophila melanogaster GN=His2A PE... [more]
H2A_DROHY1.189e-3163.64Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER1.189e-3163.64Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2A_ASTRU1.189e-3163.06Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AX_TETPY1.189e-3158.54Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A2_LODEL1.189e-3162.39Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2... [more]
H2A1_SOLLC1.189e-3164.49Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A1C_RAT1.189e-3163.89Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN1.189e-3163.89Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2A_COCIM1.553e-3161.61Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00717 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00717 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623626 ID=BQ623626; Name=BQ623626; organism=Citrus sinensis; type=EST; length=625bp
ACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTTTTTCTG
TAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAG
CCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTT
CCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGC
GAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTC
GCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAA
GAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGG
AATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTA
CCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGG
TGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATT
TTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTATGAGTTT
TTTTCTTATGGTACAGAGATTGCATTTGCTAATCTTTTTCACTATGTGTA
ACTTAATGAGATTATTCCATTGCTT
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