BQ623626

Overview
NameBQ623626
Unique NameBQ623626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 53/111 (47.75%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKA-GKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKG 451
            S S KAGLQFP GRI R L+   +   R+GA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K KG
Sbjct:   25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKG 134          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 54/111 (48.65%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKG 451
            S S KAGLQFP G + RFLK     + RVGA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K KG
Sbjct:   25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKG 134          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQ 472
            SK  SRS +AG+ FPV R+ R L+ G++A RV + AP                   N    +KK RI P+HI  AV ND EL+ L   VTIA GGVLP   Q+   KK    K     +SQ
Sbjct:   32 SKPESRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKPSKKAAEGSSQ 152          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            KS S+S K GL FPVGR+   ++ G+YA R+GA GA                     AA+  KK  R+ PR + LA R+D+++  LL +VT+++ GV+PNI + +  KK GK
Sbjct:   13 KSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGK 124          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  104 KASKSVS--RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN--RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 430
            KASK  S  RS KAGL FPVGR+   L+ G+YA R+GA                       AA    K   R+ PR + LAVR+D++L  LL  VT++ GGV+P++++ L  K
Sbjct:   10 KASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKK 122          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  107 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            A KS S+S K GL FPVGR+   ++ G+YA R+GA GA                     AA+  KK  R+ PR + LA R+D+++  LL +VT+++ GV+P++ + +  KK GK
Sbjct:   11 ARKSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKKGGK 124          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 43/108 (39.81%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 433
            S+   RS KA LQF V R+   LK G+Y  R+GA AP                   N    +K+  I PRHI LAVRND E++KL   VTI+  GV+P   + L  +K
Sbjct:   13 SRRKLRSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  209 AGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 409
            AGAP     XXX       X  GNAARDNKK+RI+PRH+QLAV     L+KLLG+VTIA GGVLPNI
Sbjct:    1 AGAPVYLAAXXXYLTAEILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL--PKKVG 439
            SRS +A L FPV RI + ++ G++ +R  + AP                     A    K RI P+HI L++  D EL+ LL +VTIANGGV   IH  LL  PKK G
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239          
The following BLAST results are available for this feature:
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AZ_PHANO7.006e-1647.75Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AZ_ASPTN9.149e-1648.65Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2AX_DICDI2.943e-1440.50Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2A1_LEIIN3.254e-1339.29Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]
H2A_TRYCR5.551e-1339.82Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2A2_LEIIN9.468e-1337.72Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO1.237e-1239.81Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2A_OLILU1.615e-1262.69Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]
H2AV1_DICDI8.015e-1239.81Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00717 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00717 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623626 ID=BQ623626; Name=BQ623626; organism=Citrus sinensis; type=EST; length=625bp
ACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTTTTTCTG
TAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAG
CCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTT
CCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGC
GAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTC
GCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAA
GAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGG
AATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTA
CCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGG
TGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATT
TTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTATGAGTTT
TTTTCTTATGGTACAGAGATTGCATTTGCTAATCTTTTTCACTATGTGTA
ACTTAATGAGATTATTCCATTGCTT
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