BQ623626

Overview
NameBQ623626
Unique NameBQ623626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:57..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.307e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK-GKG 451
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.307e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK-GKG 451
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.307e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK-GKG 451
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.307e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  122 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK-GKG 451
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.076e-32
Identity = 75/122 (61.48%), Postives = 85/122 (69.67%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            +KS+SRS KAGLQFPVGR+ R LK G YA+RVGAGAP                  GNAARDNKK RIVPRH+QLA+RNDEEL KLLG+V I+ GGV+P+I   LLP K  KGK D G  SQE
Sbjct:   18 TKSMSRSSKAGLQFPVGRVHRLLKKGNYAQRVGAGAPVYMAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLPSKSSKGKKDEG-VSQE 138          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.076e-32
Identity = 74/120 (61.67%), Postives = 84/120 (70.00%), Query Frame = 2
Query:  116 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            S SRS KAGL FPVGR+ R L+ G YA+RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K    K   G ASQE
Sbjct:   15 STSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAK----KAKPGKASQE 130          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.405e-32
Identity = 72/121 (59.50%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.405e-32
Identity = 72/121 (59.50%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.835e-32
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 439
            K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.835e-32
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGS 463
            KSVSRS KAGLQFPVGRI R+LK G+YA+ VG GAP                  GNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+  LLPKK  +     GS
Sbjct:   27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143          
The following BLAST results are available for this feature:
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_ASPNG6.307e-3365.77Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC6.307e-3365.77Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]
H2A_ASPFU6.307e-3365.77Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL6.307e-3365.77Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A_AGABI1.076e-3261.48Histone H2A OS=Agaricus bisporus PE=2 SV=3[more]
H2A2_PICST1.076e-3261.67Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A6_ORYSJ1.405e-3259.50Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.405e-3259.50Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A_PARAN1.835e-3264.22Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_MAIZE1.835e-3261.54Histone H2A OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00717 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00717 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623626 ID=BQ623626; Name=BQ623626; organism=Citrus sinensis; type=EST; length=625bp
ACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTTTTTCTG
TAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAG
CCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTT
CCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGC
GAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTC
GCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAA
GAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGG
AATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTA
CCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGG
TGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATT
TTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTATGAGTTT
TTTTCTTATGGTACAGAGATTGCATTTGCTAATCTTTTTCACTATGTGTA
ACTTAATGAGATTATTCCATTGCTT
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