BQ623626

Overview
NameBQ623626
Unique NameBQ623626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.397e-32
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 439
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 71/112 (63.39%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            KS SRS +AGLQFPVGRI R L+ G YAER+GAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  104 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            + +KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   10 QGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 73/120 (60.83%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQ 472
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K      S S+
Sbjct:   21 KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.088e-32
Identity = 70/107 (65.42%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 433
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 71/112 (63.39%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  113 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            KS +RS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 70/113 (61.95%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 448
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 475
            +K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134          
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  110 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 442
            +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 AKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
The following BLAST results are available for this feature:
BLAST of BQ623626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_ORYSI2.397e-3263.30Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A_SIPNU3.130e-3263.39Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_ACRFO3.130e-3263.72Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A1_MEDTR3.130e-3260.83Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A2_MEDTR4.088e-3265.42Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_STRPU5.339e-3262.16Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_PLADU5.339e-3263.39Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAIMO5.339e-3261.95Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AX_XENLA5.339e-3258.20Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AL_STRPU5.339e-3263.06Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00717 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00717 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623626 ID=BQ623626; Name=BQ623626; organism=Citrus sinensis; type=EST; length=625bp
ACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTTTTTCTG
TAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAG
CCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTT
CCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGC
GAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTC
GCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAA
GAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGG
AATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTA
CCCAACATTCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGG
TGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATT
TTACTAGTATCTGTAAAAAAAGAAAAAAAAGGAAAAATGGTTATGAGTTT
TTTTCTTATGGTACAGAGATTGCATTTGCTAATCTTTTTCACTATGTGTA
ACTTAATGAGATTATTCCATTGCTT
back to top