BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.824e-31
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+I ARK            DH+ DWVLGT EG +VSMGVYSDGSY VP GLI+SFPV C NG++TIVQGL +D+ S+  ++LT EEL  EK
Sbjct:  234 AVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEK 324          

HSP 2 Score: 44.669 bits (104), Expect = 6.824e-31
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 2
Query:   14 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            +N + G+ P+   +KD+ WL GEFI+TVQ+RGA
Sbjct:  201 INLSTGKTPISTAIKDEKWLQGEFISTVQKRGA 233          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.824e-31
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTPEG +VSMG+ SDG+ Y VP  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEK 324          

HSP 2 Score: 47.3654 bits (111), Expect = 6.824e-31
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            +HA V     E  V + +KDD+WL GEFITTVQQRGA   +++K
Sbjct:  196 SHAKVKLHGKEVGVYDALKDDSWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.507e-30
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTP+G +VSMGV SDG SY +P  L+YSFP+T +N  W IV+GL I++FSR+K+DLTA+EL EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEK 324          

HSP 2 Score: 48.521 bits (114), Expect = 1.507e-30
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            +HATVN    +    E VK+D WL GEFITTVQQRGA   +++K
Sbjct:  196 SHATVNLQGKDVGAFEAVKNDDWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.555e-30
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          

HSP 2 Score: 50.8322 bits (120), Expect = 2.555e-30
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V     E  V E +KDD+WL GEFITTVQQRGA   +++K
Sbjct:  196 NHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.327e-30
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          

HSP 2 Score: 50.8322 bits (120), Expect = 3.327e-30
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA V     E  V E +KDD+WL GEFITTVQQRGA   +++K
Sbjct:  196 NHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.332e-30
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTP G +VSMGV SDG SY VP  L+YSFPV  ++  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          

HSP 2 Score: 50.8322 bits (120), Expect = 4.332e-30
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            NHA VN    E  V E +KDD+WL G+FI TVQQRGA   +++K
Sbjct:  196 NHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.339e-28
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFP+T +N  W IV+GL I++FSR+K+D+TA+EL +EK
Sbjct:  233 AVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEK 324          

HSP 2 Score: 41.9726 bits (97), Expect = 1.339e-28
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 2
Query:    2 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAGNHQSQK 133
            +HA+V     +    E VK+D WL G FITTVQQRGA   +++K
Sbjct:  196 SHASVTLQGKDVGAFEAVKNDDWLKGGFITTVQQRGAAVIKARK 239          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.946e-28
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   90 PQSNNVVLAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            P   N    +I ARK             H+RDW+LGT +G  VSM VYSDGSYNVP GLI+SFPVTC NG+WTIVQGL I+  +++K+D T +EL EEK
Sbjct:  285 PLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEK 383          

HSP 2 Score: 33.4982 bits (75), Expect = 2.946e-28
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            +P+   V DD WLN +FI  VQ RGA
Sbjct:  267 EPIPSSVNDDKWLNEQFIPLVQNRGA 292          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.847e-28
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII AR             +HIRDW LGTP   WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL I+EFSR K+  T +EL EE+
Sbjct:  228 AIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          

HSP 2 Score: 33.4982 bits (75), Expect = 3.847e-28
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 2
Query:   17 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            NT    KP   LV D AW   ++I TVQQRGA
Sbjct:  197 NTLVDGKPALSLV-DQAWYESDYIPTVQQRGA 227          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.520e-28
Identity = 55/91 (60.44%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AIIKAR              H+RDW LGTPE  WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL+IDEFSR K+  T  EL EE+
Sbjct:  228 AIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEER 318          

HSP 2 Score: 28.8758 bits (63), Expect = 6.520e-28
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 2
Query:   29 GEKPVRELVKDDAWLNGEFITTVQQRGA 112
            G+  V ++ KD  W   +FI TVQQRGA
Sbjct:  202 GDVAVEQVEKD--WYENDFIPTVQQRGA 227          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDHC_DICDI6.824e-3158.24Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_FELCA6.824e-3156.52Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_XENTR1.507e-3056.52Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_MOUSE2.555e-3057.61Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_RAT3.327e-3057.61Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_CHICK4.332e-3055.43Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDHC_XENLA1.339e-2856.52Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHA_DICDI2.946e-2854.55Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_CELJU3.847e-2858.24Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_SACD26.520e-2860.44Malate dehydrogenase OS=Saccharophagus degradans (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
back to top