BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.909e-20
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  171 DHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            DH+  WV GTPEG W S  + SDGSY VP GLI SFPVT   G++ IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  249 DHVYTWVNGTPEGDWTSAAIPSDGSYGVPEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEER 320          

HSP 2 Score: 25.7942 bits (55), Expect = 3.909e-20
Identity = 15/36 (41.67%), Postives = 18/36 (50.00%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HA V   +G     E V D  W+  EFI  V +RGA
Sbjct:  198 HAQVGGRSGA----EAVGDQKWIAEEFIPRVAKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.085e-20
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  171 DHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            DHI  WV GTP G W S  + SDGSY VP GLI SFPVT   G + IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  249 DHIFTWVNGTPAGDWTSAAIPSDGSYGVPEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEER 320          

HSP 2 Score: 28.1054 bits (61), Expect = 5.085e-20
Identity = 16/36 (44.44%), Postives = 19/36 (52.78%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HA V   +G     E V D AW+  EFI  V +RGA
Sbjct:  198 HAEVGGRSGA----EAVGDQAWIADEFIPRVAKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_VEREI (Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.086e-20
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDW LG+  G WV+MG+ SDG Y +P  +++ FPVTC NGE+ +VQGL++D FS++++  T  EL  E+
Sbjct:  232 AIIEARGLSSAASAANAAIDHMRDWALGS-NGRWVTMGIASDGQYGIPKDIVFGFPVTCANGEYQLVQGLALDAFSQQRIQATLAELQAEQ 321          

HSP 2 Score: 27.335 bits (59), Expect = 5.086e-20
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2
Query:   26 AGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            AG + V  ++ D AW    F+ TV +RGA
Sbjct:  203 AGGQSVAAMINDQAWNANVFLPTVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.086e-20
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+ DWVLGT  G  V+MG+ S+G Y +PA  ++ +PVTC NG++ IV+GL ID +S++K+++T  EL EEKA
Sbjct:  230 AIIEARGLSSAASAANAAIDHVHDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTCANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          

HSP 2 Score: 28.8758 bits (63), Expect = 5.086e-20
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V++++ D  W N  F+ TV +RGA
Sbjct:  204 KSVKDMINDPVWNNDVFLPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  231 AIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  231 AIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  231 AIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.119e-19
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII AR             DH+RDW LG+ +G WV+MGV S+G Y +PAG+++ FPVT  NGE+ IV+GL+ID FS++ +D T  EL  E+
Sbjct:  232 AIIAARGLSSAASAANAAIDHMRDWALGS-KGEWVTMGVPSNGEYGIPAGIVFGFPVTTENGEYKIVEGLAIDAFSQECIDKTLAELQGEQ 321          

HSP 2 Score: 27.335 bits (59), Expect = 1.119e-19
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V++ + D AW    F+ TV +RGA
Sbjct:  206 KSVKDAINDQAWNKDVFLPTVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.119e-19
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDWVLGT  G  V+MG+ S+G Y +PA  ++ +PVT  NG++ IV+GL ID +S++K+++T  EL EEKA
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          

HSP 2 Score: 29.6462 bits (65), Expect = 1.119e-19
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V++L+ D  W N  F+ TV +RGA
Sbjct:  204 KSVKDLINDPVWNNDVFLPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.455e-19
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AI++AR             DH RD +LG   G W SM V SDGSY VP GL+ SFPVT   G+W+IVQGL I EFSR ++D +  EL  E+A
Sbjct:  229 AILEARGASSAASAANATIDHARDLMLGNHRGDWTSMSVVSDGSYGVPEGLVSSFPVTTSGGDWSIVQGLDISEFSRARIDASVAELESERA 320          

HSP 2 Score: 23.0978 bits (48), Expect = 1.455e-19
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            +P  +LV  + W+   FI TV +RGA
Sbjct:  204 RPALDLVSRE-WVQDTFIPTVAKRGA 228          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDH_FRAAA3.909e-2058.33Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_FRASC5.085e-2058.33Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_VEREI5.086e-2045.05Malate dehydrogenase OS=Verminephrobacter eiseniae... [more]
MDH_RALEJ5.086e-2046.74Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_XANCP7.780e-2051.09Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANCB7.780e-2051.09Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC87.780e-2051.09Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_DIAST1.119e-1948.35Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_RALEH1.119e-1946.74Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_KOCRD1.455e-1950.00Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
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