BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.960e-11
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKAR             D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  229 AVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          

HSP 2 Score: 35.4242 bits (80), Expect = 4.960e-11
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HAT++     KP  E+++D  WL  +FI  +QQRGA
Sbjct:  197 HATIDG----KPATEVIRDKNWLLNDFIPVIQQRGA 228          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.960e-11
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKAR             D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  229 AVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          

HSP 2 Score: 35.4242 bits (80), Expect = 4.960e-11
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HAT++     KP  E+++D  WL  +FI  +QQRGA
Sbjct:  197 HATIDG----KPATEVIRDKNWLLNDFIPVIQQRGA 228          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.960e-11
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKAR             D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  229 AVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          

HSP 2 Score: 35.4242 bits (80), Expect = 4.960e-11
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HAT++     KP  E+++D  WL  +FI  +QQRGA
Sbjct:  197 HATIDG----KPATEVIRDKNWLLNDFIPVIQQRGA 228          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 6.375e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  171 DHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            D IR  +  TPEG W S GVY++G+ Y +   +++S P  CR   +G++ +V  +  D++ R+KL  T  EL  EK
Sbjct:  342 DAIRSLITPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEK 415          

HSP 2 Score: 34.6538 bits (78), Expect = 6.375e-11
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 2
Query:    2 NHAT------VNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 109
            NH+T      +N      PV+E++KD+ WL  EF   VQ+RG
Sbjct:  280 NHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFTEKVQKRG 321          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.377e-11
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  171 DHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            D IR  ++ TPEG W S GVY+ G+ Y +   +++S P  CR   +G++ +V+ +  D++ R+KL  T  EL  EK
Sbjct:  338 DAIRSLIIPTPEGDWFSTGVYTTGNPYGIAEDIVFSMP--CRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEK 411          

HSP 2 Score: 33.8834 bits (76), Expect = 6.377e-11
Identity = 17/42 (40.48%), Postives = 23/42 (54.76%), Query Frame = 2
Query:    2 NHAT------VNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 109
            NH+T      +N      PV+E++KD  WL  EF   VQ+RG
Sbjct:  276 NHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRG 317          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 6.439e-11
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            A+IKAR             D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  229 AVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGRYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          

HSP 2 Score: 35.4242 bits (80), Expect = 6.439e-11
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HAT++     KP  E+++D  WL  +FI  +QQRGA
Sbjct:  197 HATIDG----KPATEVIRDKNWLLNDFIPVIQQRGA 228          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDH_COXBR4.960e-1131.87Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXBN4.960e-1131.87Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB14.960e-1131.87Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDHP_PEA6.375e-1138.16Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MEDSA6.377e-1138.16Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDH_COXB26.439e-1131.87Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
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