BQ623627 | Citrus Genome Database

Overview


Name	BQ623627
Unique Name	BQ623627
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	715

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 4.183e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321

HSP 2 Score: 26.1794 bits (56), Expect = 4.183e-23
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  +++ + D AW    F+ TV +RGA
Sbjct:  201 TANGES-LKDKINDPAWNKDVFLPTVGKRGA 230

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.183e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321

HSP 2 Score: 26.1794 bits (56), Expect = 4.183e-23
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  +++ + D AW    F+ TV +RGA
Sbjct:  201 TANGES-LKDKINDPAWNKDVFLPTVGKRGA 230

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.183e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321

HSP 2 Score: 26.1794 bits (56), Expect = 4.183e-23
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  +++ + D AW    F+ TV +RGA
Sbjct:  201 TANGES-LKDKINDPAWNKDVFLPTVGKRGA 230

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.183e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321

HSP 2 Score: 26.1794 bits (56), Expect = 4.183e-23
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  +++ + D AW    F+ TV +RGA
Sbjct:  201 TANGES-LKDKINDPAWNKDVFLPTVGKRGA 230

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.183e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321

HSP 2 Score: 26.1794 bits (56), Expect = 4.183e-23
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  +++ + D AW    F+ TV +RGA
Sbjct:  201 TANGES-LKDKINDPAWNKDVFLPTVGKRGA 230

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.442e-23
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 383
            AII+AR             DH+RDWVLG+ E  WV+MGV SDGSY +PAG+++ FP  C+ G+++I+QGL IDE+SR+K++ T +EL++E
Sbjct:  233 AIIEARGLSSAASAANAAIDHVRDWVLGSDE--WVTMGVPSDGSYGIPAGIVFGFPCECKGGKFSIIQGLEIDEYSREKINFTLKELTDE 320

HSP 2 Score: 28.8758 bits (63), Expect = 5.442e-23
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:   41 VRELVKDDAWLNGEFITTVQQRGA 112
            V+ LV D AW N  F+ TV +RGA
Sbjct:  209 VKALVNDHAWNNDVFLPTVGKRGA 232

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.442e-23
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319

HSP 2 Score: 29.6462 bits (65), Expect = 5.442e-23
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ LV DD W    FI TV +RGA
Sbjct:  200 TAEGESMLK-LVNDDVWNRETFIPTVGKRGA 229

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.080e-23
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 3

Query:  117 IIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            II AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D TA EL++E+
Sbjct:  231 IIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320

HSP 2 Score: 29.261 bits (64), Expect = 7.080e-23
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2

Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K   E+V D AW+   FI TV +RGA
Sbjct:  204 KNAAEVVNDQAWIEEYFIPTVAKRGA 229

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.080e-23
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D T  EL++E+
Sbjct:  230 AIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320

HSP 2 Score: 29.261 bits (64), Expect = 7.080e-23
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2

Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K   E+V D AW+   FI TV +RGA
Sbjct:  204 KNAAEVVNDQAWIEEYFIPTVAKRGA 229

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.080e-23
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY  PVT  NGE+  V+GL ID FSR++LD T +EL EE+
Sbjct:  232 AIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGVPVTTENGEYKRVEGLEIDAFSRERLDFTLKELLEER 321

HSP 2 Score: 30.0314 bits (66), Expect = 7.080e-23
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 2

Query:   29 GEKPVRELVKDDAWLNGEFITTVQQRGA 112
            G + + +L+ DDAW    FI TV +RGA
Sbjct:  204 GGQSLAKLINDDAWNRDTFIPTVGKRGA 231

The following BLAST results are available for this feature:

BLAST of BQ623627 vs. ExPASy Swiss-Prot

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166


Match Name	E-value	Identity	Description
MDH_ACIBT	4.183e-23	54.35	Malate dehydrogenase OS=Acinetobacter baumannii (s...	[more]
MDH_ACIBS	4.183e-23	54.35	Malate dehydrogenase OS=Acinetobacter baumannii (s...	[more]
MDH_ACIBC	4.183e-23	54.35	Malate dehydrogenase OS=Acinetobacter baumannii (s...	[more]
MDH_ACIB5	4.183e-23	54.35	Malate dehydrogenase OS=Acinetobacter baumannii (s...	[more]
MDH_ACIB3	4.183e-23	54.35	Malate dehydrogenase OS=Acinetobacter baumannii (s...	[more]
MDH_DECAR	5.442e-23	50.00	Malate dehydrogenase OS=Dechloromonas aromatica (s...	[more]
MDH2_BURVG	5.442e-23	53.85	Malate dehydrogenase 2 OS=Burkholderia vietnamiens...	[more]
MDH_MYCUA	7.080e-23	54.44	Malate dehydrogenase OS=Mycobacterium ulcerans (st...	[more]
MDH_MYCMM	7.080e-23	53.85	Malate dehydrogenase OS=Mycobacterium marinum (str...	[more]
MDH_BORPD	7.080e-23	52.75	Malate dehydrogenase OS=Bordetella petrii (strain ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG