BQ623627 | Citrus Genome Database

Overview


Name	BQ623627
Unique Name	BQ623627
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	715

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.081e-23
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319

HSP 2 Score: 29.261 bits (64), Expect = 7.081e-23
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.081e-23
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319

HSP 2 Score: 29.261 bits (64), Expect = 7.081e-23
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.081e-23
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319

HSP 2 Score: 29.261 bits (64), Expect = 7.081e-23
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.081e-23
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319

HSP 2 Score: 29.261 bits (64), Expect = 7.081e-23
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.199e-22
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+
Sbjct:  230 AIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320

HSP 2 Score: 28.4906 bits (62), Expect = 1.199e-22
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 2

Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K   E V D+ WL   FI TV +RGA
Sbjct:  204 KNAAETVNDEVWLADTFIPTVAKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.199e-22
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T +EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLQELLEER 319

HSP 2 Score: 27.335 bits (59), Expect = 1.199e-22
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 2

Query:   14 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            V TA G+  + +L+ D+ W    FI TV +RGA
Sbjct:  198 VATAEGQD-LTKLINDEEWNRNTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.199e-22
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLNELLEER 319

HSP 2 Score: 28.1054 bits (61), Expect = 1.199e-22
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 2

Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA G+  + +L+ DD W    FI TV +RGA
Sbjct:  200 TAEGQD-LTKLINDDEWNRNTFIPTVGKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.560e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   ++ FPVT  NGE+ IVQGL ID FS+++++LT +ELSEE+
Sbjct:  232 AIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321

HSP 2 Score: 27.7202 bits (60), Expect = 1.560e-22
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2

Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V+E + D+ W    F+ TV +RGA
Sbjct:  206 KSVKEAINDEVWNKDVFLPTVGKRGA 231

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.560e-22
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+  WV GT +G W SMG+ SDGSY VP GLI SFPVT ++G + IVQGL I+EFSR ++D + +EL EE+
Sbjct:  230 AIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320

HSP 2 Score: 30.0314 bits (66), Expect = 1.560e-22
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 2

Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HA+V   AG K   E+V D+ WL  +FI TV +RGA
Sbjct:  198 HASV---AG-KNAAEVVNDEKWLAEDFIPTVAKRGA 229

[Close]

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.560e-22
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 3

Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  232 AIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321

HSP 2 Score: 30.0314 bits (66), Expect = 1.560e-22
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 2

Query:   29 GEKPVRELVKDDAWLNGEFITTVQQRGA 112
            G + + +L+ DDAW    FI TV +RGA
Sbjct:  204 GGQGLTQLINDDAWNRDTFIPTVGKRGA 231

The following BLAST results are available for this feature:

BLAST of BQ623627 vs. ExPASy Swiss-Prot

BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166


Match Name	E-value	Identity	Description
MDH_BURCJ	7.081e-23	53.85	Malate dehydrogenase OS=Burkholderia cepacia (stra...	[more]
MDH_BURCH	7.081e-23	53.85	Malate dehydrogenase OS=Burkholderia cenocepacia (...	[more]
MDH_BURCC	7.081e-23	53.85	Malate dehydrogenase OS=Burkholderia cenocepacia (...	[more]
MDH_BURCA	7.081e-23	53.85	Malate dehydrogenase OS=Burkholderia cenocepacia (...	[more]
MDH_STRGG	1.199e-22	51.65	Malate dehydrogenase OS=Streptomyces griseus subsp...	[more]
MDH_BURXL	1.199e-22	53.85	Malate dehydrogenase OS=Burkholderia xenovorans (s...	[more]
MDH_BURPP	1.199e-22	53.85	Malate dehydrogenase OS=Burkholderia phytofirmans ...	[more]
MDH_HERAR	1.560e-22	52.75	Malate dehydrogenase OS=Herminiimonas arsenicoxyda...	[more]
MDH_STRAW	1.560e-22	51.65	Malate dehydrogenase OS=Streptomyces avermitilis G...	[more]
MDH_BORPE	1.560e-22	50.55	Malate dehydrogenase OS=Bordetella pertussis GN=md...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG