BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.436e-22
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          

HSP 2 Score: 29.261 bits (64), Expect = 3.436e-22
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2
Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.436e-22
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          

HSP 2 Score: 29.261 bits (64), Expect = 3.436e-22
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2
Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.436e-22
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          

HSP 2 Score: 29.261 bits (64), Expect = 3.436e-22
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2
Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.436e-22
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          

HSP 2 Score: 29.261 bits (64), Expect = 3.436e-22
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2
Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.436e-22
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          

HSP 2 Score: 29.261 bits (64), Expect = 3.436e-22
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2
Query:   20 TAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            TA GE  ++ L+ DD W    FI TV +RGA
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.469e-22
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DHI DWVLGT  G WV+MG+ S G Y +PA +IY FPVTC NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  232 AIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          

HSP 2 Score: 26.9498 bits (58), Expect = 4.469e-22
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V++ + D AW    FI TV +RGA
Sbjct:  206 KSVKDSINDAAWNKDVFIPTVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.469e-22
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   I+ FPVT  NGE+ IVQGL ID FS+++++LT +EL EE+
Sbjct:  232 AIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          

HSP 2 Score: 28.1054 bits (61), Expect = 4.469e-22
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2
Query:   26 AGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            A  K V+E + D+ W    F+ TV +RGA
Sbjct:  203 ADGKSVKEAINDEVWNKDVFLPTVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 383
            AII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  228 AIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 383
            AII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  228 AIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 383
            AII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  228 AIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDH_BURP03.436e-2252.75Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS3.436e-2252.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA3.436e-2252.75Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM93.436e-2252.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM73.436e-2252.75Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_POLSQ4.469e-2252.17Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_JANMA4.469e-2252.75Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_THETH6.364e-2251.11Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET86.364e-2251.11Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET26.364e-2251.11Malate dehydrogenase OS=Thermus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
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