BQ623627

Overview
NameBQ623627
Unique NameBQ623627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+ DW LGT +G WVSMG+ SDGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  230 AIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW LGT  G WV+MG+ SDGSY +P G+IY  PVTC NGE+  V+GL IDEFSR+++D T +EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGSYGIPEGVIYGVPVTCENGEYKRVEGLEIDEFSRERMDKTLQELEEERA 321          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.564e-22
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDE-FSRKKLDLTAEELSEEK 386
            AIIKAR              H+R WVLGT E  WVSMGVYS+G Y +  GLIYSFP TC NG+W+IV G+ +   FS++K+  T +ELSEE+
Sbjct:  230 AIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          

HSP 2 Score: 25.409 bits (54), Expect = 7.564e-22
Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 2
Query:   11 TVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            T +T  G K   +LV D  W  G +I  VQQRGA
Sbjct:  198 TASTVNG-KLALDLV-DRTWYEGTYIPEVQQRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.566e-22
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII AR             + +RDW+  TPEG WVSM + SDGSY VP GLI SFPVT  NG+  IVQGL ID+FSR K+D +A+EL++E+
Sbjct:  228 AIIDARGASSAASAANATVECMRDWMGSTPEGDWVSMAIPSDGSYGVPEGLISSFPVTITNGKVEIVQGLDIDDFSRAKIDASAKELADER 318          

HSP 2 Score: 28.1054 bits (61), Expect = 7.566e-22
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = 2
Query:    5 HATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            HA V   AG+K     + ++AW+  EFI TV +RGA
Sbjct:  197 HAEV---AGQKATN--LVNEAWIENEFIPTVAKRGA 227          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.280e-21
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DHI DWVLGT  G WV+MG+ S G Y++PA +IY FPV C NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  232 AIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          

HSP 2 Score: 26.9498 bits (58), Expect = 1.280e-21
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            K V++ + D AW    FI TV +RGA
Sbjct:  206 KSVKDSINDAAWNKDVFIPTVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.280e-21
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+ DWVLGTPEG W S+ + S G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  232 AIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322          

HSP 2 Score: 28.8758 bits (63), Expect = 1.280e-21
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 2
Query:   29 GEKPVRELVKDDAWLNGEFITTVQQRGA 112
            G++   ++  D  WL G+FI TV  RG+
Sbjct:  204 GDRSGADIAADREWLTGDFIPTVANRGS 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.666e-21
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 386
            AII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  ++Y   VTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  230 AIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIVYGVAVTCENGEYKRVEGLQIDAFSREKMDNTLNELLEER 319          

HSP 2 Score: 27.335 bits (59), Expect = 1.666e-21
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 2
Query:   14 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 112
            V TA G+  + +L+ D+ W    FI TV +RGA
Sbjct:  198 VATAEGQD-LTKLINDEEWNRNTFIPTVGKRGA 229          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.819e-21
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+ DW LGT  G WV+MG+ SDGSY +P G +Y  PVTC  G++  V+GL ID FSR+K+D T +EL+EE+A
Sbjct:  232 AIIEARGLSSAASAANAAIDHMHDWALGT-NGKWVTMGLPSDGSYGIPEGTMYGVPVTCTPGKYERVKGLEIDAFSREKMDFTLKELTEEQA 322          

HSP 2 Score: 29.261 bits (64), Expect = 2.819e-21
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   35 KPVRELVKDDAWLNGEFITTVQQRGA 112
            +P  +LV D+AW   E+I  V +RGA
Sbjct:  206 QPAVKLVNDEAWYRNEYIPKVGKRGA 231          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.819e-21
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          

HSP 2 Score: 29.261 bits (64), Expect = 2.819e-21
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:   38 PVRELVKDDAWLNGEFITTVQQRGA 112
            P+ E + D AW    FI TV +RGA
Sbjct:  206 PIIEAINDQAWNANSFIPTVSKRGA 230          
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.819e-21
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  114 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 389
            AII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  231 AIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          

HSP 2 Score: 29.261 bits (64), Expect = 2.819e-21
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:   38 PVRELVKDDAWLNGEFITTVQQRGA 112
            P+ E + D AW    FI TV +RGA
Sbjct:  206 PIIEAINDQAWNANSFIPTVSKRGA 230          
The following BLAST results are available for this feature:
BLAST of BQ623627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
MDH_DEIRA6.364e-2252.75Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_ACIAD6.364e-2254.35Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_PSYA27.564e-2252.17Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_PROAC7.566e-2253.85Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_POLNS1.280e-2151.09Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_RHOOB1.280e-2147.25Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_BURP81.666e-2151.65Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_SYNFM2.819e-2150.00Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_XYLFT2.819e-2150.00Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLFM2.819e-2150.00Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00718 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00718 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623627 ID=BQ623627; Name=BQ623627; organism=Citrus sinensis; type=EST; length=715bp
CAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGC
TTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAA
CAACGTGGTGCTGGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGT
CTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACT
CCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAA
TGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCAACGGTG
AATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGGAAGAAG
TTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTC
ATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCC
TTAGCTTTGTCTGAGTAGTTGGTATAGTTACAGTTTCGAATAAAACCATT
GTTGACACCTGGAGGAACCATTGATGATGGAAAAGCCTTTCCATCTTATG
TTGCTATTTCTGCATTTGAATATCGGGATTTGGGAGTTTTGGTACTTTTC
CTGGATAAATGGATATAAAGGCCCATTGGGATTTATGTATCAAACTATCA
ATAACAATTTTTTTTTTTGTTTTAACAAAAAAAGAAAAAAAATAAAAAAT
TTAAATAAACCTCAG
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