BQ623628

Overview
NameBQ623628
Unique NameBQ623628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623628_ssr161 microsatellite BQ623628_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:278..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.317e-23
Identity = 58/128 (45.31%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KIR++++I+ ++L IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PVRR  G W      PH+VP  V+GK GSV V ++P P
Sbjct:   23 KIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAP 149          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.721e-23
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +IRSL +I+  +LPI E +I+D LIG +LK E + +  VQK T AG+  RF+  VV+G+ +G VG+G   ++++A AI  AI  AKL++IPVRR  G W      PH+VP  V GK GSV V + P P
Sbjct:   26 RIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAP 153          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 57/128 (44.53%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KIR++++I+ ++  IKE +I+D L+   LK E++ I  VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRR  G W      PH+VP  V GK GSV V ++P P
Sbjct:   23 KIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAP 149          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            ++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RR  G W    G PHTVP +VTGK GSV+V ++P P
Sbjct:   21 QVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAP 147          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            ++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RR  G W    G PHTVP +VTGK GSV+V ++P P
Sbjct:   21 QVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAP 147          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.833e-23
Identity = 56/128 (43.75%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KIR++++++ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPVRR  G W      PH+VP  V GK GSV V ++P P
Sbjct:   23 KIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAP 149          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.833e-23
Identity = 55/128 (42.97%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+++++++     I E +I+D L+   L++EV+ +  VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRR  G W    GRPH++P ++TGKCGSV + + P P
Sbjct:   24 EIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAP 150          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.006e-23
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+++ +     LP+KEY+I+D L+ + LKDEV+ I   Q+ T +G+R  +   VVVG+ DG+VGLG+  SKE A AIR A+I AKL+++ +RR  G W    GR HT+P  V GK GSV + + P P
Sbjct:   19 QIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAP 145          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.538e-23
Identity = 56/128 (43.75%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+++ +     LP+KEY+I+D L+ + +KDEV+ I   Q+ T +G+R  +   VVVG+ DG++GLG+  SKE A AIR A+I AKL+++ +RR  G W    GR HT+P  V GK GSV + + P P
Sbjct:   19 QIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAP 145          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.538e-23
Identity = 59/128 (46.09%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            ++ S+E+     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  + R  G W    G PHTVP +VTGK GSV+V ++P P
Sbjct:   21 QVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAP 147          
The following BLAST results are available for this feature:
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_PYRCJ1.317e-2345.3130S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_HYPBU1.721e-2346.8830S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_PYRIL2.935e-2344.5330S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_METMA2.935e-2346.0930S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METAC2.935e-2346.0930S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_PYRAR3.833e-2343.7530S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]
RS5_METKA3.833e-2342.9730S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_THEAC5.006e-2345.3130S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_THEVO6.538e-2343.7530S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]
RS5_METBF6.538e-2346.0930S ribosomal protein S5P OS=Methanosarcina barker... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00719 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623628 ID=BQ623628; Name=BQ623628; organism=Citrus sinensis; type=EST; length=413bp
AAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGA
GTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCA
TGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGG
TTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGG
CGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATAT
TGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAG
ATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAG
TGTCACCGTGAGGATGGTTCCCGGCCCCACGTGGTGCCGGAATTGTGGCG
CTAGGGCTTCAAC
back to top