BQ623628

Overview
NameBQ623628
Unique NameBQ623628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   31 ISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAP 156          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METVA (30S ribosomal protein S5P OS=Methanococcus vannielii GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   31 ISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAP 156          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.180e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   31 ISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAP 156          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.180e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   35 ISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.766e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   35 ISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.154e-19
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I S++++     PIKE QI+D L+   L+DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V R  G W       H++P +VTGK GSV V + P P
Sbjct:   22 EITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.154e-19
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   10 SLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VRR  G W    G  H+VP +VTGK GSV V + P P
Sbjct:   25 SFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.507e-19
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGH---KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  + +I+     IKE +I+D L+     +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AK+++I ++R  G W  +  RPH++P  V GK GSV V+++PGP
Sbjct:   29 QITDIHEIFRKGYQIKEPEIVDVLLPEVNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGP 159          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.507e-19
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--RGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A V VG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G PH++P    G CGSV V ++P P
Sbjct:   35 ISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.969e-19
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  ++ I  + LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G  H++P    G CGSV V ++P P
Sbjct:   28 ITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAP 153          
The following BLAST results are available for this feature:
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METVS3.966e-2042.5230S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METVA3.966e-2042.5230S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METMP5.180e-2042.5230S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM65.180e-2042.5230S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM76.766e-2042.5230S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METMJ1.154e-1942.1930S ribosomal protein S5P OS=Methanoculleus marisn... [more]
RS5_METLZ1.154e-1943.2030S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_PYRKO1.507e-1938.9330S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_METM51.507e-1941.7330S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_META31.969e-1941.7330S ribosomal protein S5P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00719 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623628 ID=BQ623628; Name=BQ623628; organism=Citrus sinensis; type=EST; length=413bp
AAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGA
GTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCA
TGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGG
TTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGG
CGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATAT
TGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAG
ATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAG
TGTCACCGTGAGGATGGTTCCCGGCCCCACGTGGTGCCGGAATTGTGGCG
CTAGGGCTTCAAC
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