BQ623630

Overview
NameBQ623630
Unique NameBQ623630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:123..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.279e-45
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+ KVLL
Sbjct:    4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+ KVLL
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+ KVLL
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+ KVLL
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.181e-45
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPP+SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPYAGGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTI KVLL
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
[Close]
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 2 
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTI KVLL
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
The following BLAST results are available for this feature:
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
UB2D4_HUMAN1.279e-4580.20Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D1_MOUSE1.670e-4578.22Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.670e-4578.22Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.670e-4578.22Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL2.181e-4579.21Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_MAGGR4.860e-4580.20Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D3_RAT4.860e-4580.20Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB4.860e-4580.20Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE4.860e-4580.20Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA4.860e-4580.20Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623630 ID=BQ623630; Name=BQ623630; organism=Citrus sinensis; type=EST; length=429bp
TGCCCTCCGATCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTT
GTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCCTTCGAAG
CGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTG
CAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTA
TGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATT
CATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGAC
CAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATA
TCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTGAAAGGTCCTGCTT
TTCTATCTGCTCATTGCTTACTGACCCAA
back to top