BQ623630

Overview
NameBQ623630
Unique NameBQ623630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:123..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.578e-11
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTI*KVL 397
            KR+ KE K + ++PP    A P  +++  W   I GP D+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  ++  +L
Sbjct:    8 KRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTIL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTI*KVL 397
            KR+ KE K +  +PP   SA P  E++  W   I GPP +P+  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA ++  +L
Sbjct:    8 KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATIL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTI*KVL 397
            KR+ KE K + ++PP    A P  +++  W   I GPP++PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   + W+P+ ++  +L
Sbjct:    8 KRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATIL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTI*KVLL 400
            +KRI KEL  +    P + S            D+   +  I GP D+PYA G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDII--KVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLV 528          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.515e-11
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 2
Query:  104 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTI 385
            ++KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 136          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.515e-11
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 2
Query:  104 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTI 385
            ++KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 136          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.515e-11
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTI 385
            K ++KE+ +L+ + P +C    P    + ++Q T++ P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+
Sbjct:   35 KLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 136          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.831e-11
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTI*KVL 397
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++  +L
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSIL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.831e-11
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 2
Query:   98 KRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTI*KVL 397
            +RI  E   +  D      S     V E++F W+  I GP +S Y    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++
Sbjct:    7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISII 110          
The following BLAST results are available for this feature:
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
UBC6_YEAST1.578e-1133.98Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC6_DEBHA2.692e-1133.98Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_ASHGO2.692e-1133.01Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC17_CAEEL2.692e-1136.67Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBE2F_XENTR3.515e-1133.00NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA3.515e-1133.00NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBE2F_CHICK3.515e-1133.98NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC34_ARATH7.831e-1133.01Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC1_MIMIV7.831e-1135.58Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623630 ID=BQ623630; Name=BQ623630; organism=Citrus sinensis; type=EST; length=429bp
TGCCCTCCGATCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTT
GTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCCTTCGAAG
CGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTG
CAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTA
TGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATT
CATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGAC
CAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATA
TCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTGAAAGGTCCTGCTT
TTCTATCTGCTCATTGCTTACTGACCCAA
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