BQ623630

Overview
NameBQ623630
Unique NameBQ623630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:123..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   74 SVEASWPSKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            + + S  +KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTI KVLL
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 164          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   74 SVEASWPSKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            + + S  +KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTI KVLL
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 164          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   74 SVEASWPSKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            + + S  +KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTI KVLL
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 164          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.416e-30
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 2
Query:   74 SVEASWPSKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            SV AS   KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI KVL
Sbjct:   33 SVSAS--GKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVL 138          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.962e-26
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   +  VL
Sbjct:    7 KRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.772e-24
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  152 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLLFYLLI 415
            S G  + +++ W A I GP  +PY GG+F ++I FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLL  LL+
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLL 115          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   +  +L
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   +  +L
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI*KVLL 400
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALI 107          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   +  +L
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 106          
The following BLAST results are available for this feature:
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
UB2E3_MOUSE3.860e-3459.63Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN3.860e-3459.63Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.860e-3459.63Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
COP10_ARATH4.416e-3052.78Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC3_ARATH2.962e-2652.00Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC31_ARATH2.772e-2453.41Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_WHEAT4.729e-2448.00Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_ARATH6.176e-2447.00Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_YEAST6.176e-2450.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_ARATH6.176e-2447.00Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623630 ID=BQ623630; Name=BQ623630; organism=Citrus sinensis; type=EST; length=429bp
TGCCCTCCGATCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTT
GTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCCTTCGAAG
CGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTG
CAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTA
TGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATT
CATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGAC
CAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATA
TCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTGAAAGGTCCTGCTT
TTCTATCTGCTCATTGCTTACTGACCCAA
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