BQ623630

Overview
NameBQ623630
Unique NameBQ623630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:123..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.054e-23
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +  +L
Sbjct:    7 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.054e-23
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   +  +L
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.376e-23
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            +RI+KE + L  +P    SA P  E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.376e-23
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   95 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI*KVLL 400
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALI 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.065e-23
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            +RI+KE + L  +P    SA P  ++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.065e-23
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   +  +L
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.065e-23
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   +  +L
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAIL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTI*KVLL 400
            KR+LKEL+ L KD P    AGP +E+ +F W   I GPPD+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LL
Sbjct:    7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   98 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVL 397
            +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   +  VL
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVL 106          
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   83 ASWPSKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI*KVLL 400
            AS P KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLL
Sbjct:    2 ASLP-KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLL 106          
The following BLAST results are available for this feature:
BLAST of BQ623630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
UBCD6_DROME1.054e-2346.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA1.054e-2347.00Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC36_ARATH1.376e-2350.50Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC1_SCHPO1.376e-2347.57Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC35_ARATH3.065e-2349.50Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC2_EMENI3.065e-2343.00Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU3.065e-2343.00Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC7_YEAST4.003e-2345.22Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC2_NEUCR4.003e-2343.00Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC13_YEAST4.003e-2350.00Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623630 ID=BQ623630; Name=BQ623630; organism=Citrus sinensis; type=EST; length=429bp
TGCCCTCCGATCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTT
GTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCCTTCGAAG
CGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTG
CAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTA
TGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATT
CATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGAC
CAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATA
TCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTGAAAGGTCCTGCTT
TTCTATCTGCTCATTGCTTACTGACCCAA
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