BQ623640

Overview
NameBQ623640
Unique NameBQ623640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:511..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRGLI EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GV+
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRG +SEII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGV+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 55/80 (68.75%), Postives = 69/80 (86.25%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GV+
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GV+
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRG ++EII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGV+
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERTFIAIKPDGVQRGL+ +IISRFE KGF LV +KI+  +KE A+KHY   KERPFF+ L EF+ SGP++AMVWEGEGV+
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL +F++SGPV+AMVWEG+GV+
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVI 82          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL +F++SGPV+AMVWEG+GV+
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVI 82          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 53/81 (65.43%), Postives = 72/81 (88.89%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERTF+A+KPDGVQRGL+ EIISR+E KGF LV +K++V S+E A++HY + KE+PFF+GL +F++SGPV+AMVWEG+GV+
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROMP (Nucleoside diphosphate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.802e-27
Identity = 54/80 (67.50%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTF+AIKPDGVQRG +S+II RFE+KGFKLV +K ++P+K+ AQ HY   +ERPFF  L EF+SSGPV+AM+WEGEGV+
Sbjct:    4 ERTFLAIKPDGVQRGYVSDIIGRFEKKGFKLVGLKQLIPTKQLAQDHYGVHRERPFFKDLVEFISSGPVVAMIWEGEGVI 83          
The following BLAST results are available for this feature:
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SYNPW5.866e-2871.25Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROM95.866e-2871.25Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS31.307e-2768.75Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMM1.307e-2769.14Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM21.307e-2770.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_TRIEI1.707e-2770.37Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_SYNSC2.229e-2768.75Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPX2.229e-2768.75Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ACAM12.229e-2765.43Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK_PROMP3.802e-2767.50Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00731 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00731 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623640 ID=BQ623640; Name=BQ623640; organism=Citrus sinensis; type=EST; length=543bp
CAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAGGTCT
CTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAGCTGT
ATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTTGTTT
CAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCTCTCG
GGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGGAAGT
ACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGG
TGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGC
TTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACA
AAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCG
AGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGAGGGA
GTATTACCTTGGGTCCAAACTCCTGGAACCCCAGACCTCCGAA
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