BQ623640

Overview
NameBQ623640
Unique NameBQ623640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:511..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM5 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTF+AIKPDGVQRG I+EII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L  F+SSGPV+AM+WEGEGV+
Sbjct:    4 ERTFLAIKPDGVQRGYIAEIIGRFEKKGFKLVGLKQLIPSKQLAQDHYGVHRERPFFKDLVNFISSGPVVAMIWEGEGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A +HY   +ERPFF GL +F++SGPV+AMVWEG+GV+
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL  F++SGPV+AMVWEG+GV+
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVI 82          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TFI IKPDGVQRGL+ EIISRFE+KGF L A+K V   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TFI IKPDGVQRGL+ EIISRFE+KGF L A+K +   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV++MVWEG+GVL
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVSMVWEGKGVL 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 54/83 (65.06%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  258 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+
Sbjct:    2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVV 84          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL +++ SGPV+AMVWEG+GV+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYSDLSAKPFFNGLVDYIISGPVVAMVWEGKGVV 81          
The following BLAST results are available for this feature:
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROM54.966e-2768.75Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM34.966e-2766.67Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS98.470e-2767.50Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK1_SPIOL8.470e-2767.90Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_MESCR1.106e-2666.67Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_SYNP62.465e-2667.90Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE72.465e-2667.90Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_CAPAN2.465e-2664.20Nucleoside diphosphate kinase OS=Capsicum annuum P... [more]
NDKB_PONAB4.204e-2665.06Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDK1_TOBAC4.204e-2662.96Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00731 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00731 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623640 ID=BQ623640; Name=BQ623640; organism=Citrus sinensis; type=EST; length=543bp
CAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAGGTCT
CTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAGCTGT
ATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTTGTTT
CAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCTCTCG
GGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGGAAGT
ACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGG
TGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGC
TTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACA
AAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCG
AGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGAGGGA
GTATTACCTTGGGTCCAAACTCCTGGAACCCCAGACCTCCGAA
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