BQ623640

Overview
NameBQ623640
Unique NameBQ623640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURVG (Nucleoside diphosphate kinase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURS3 (Nucleoside diphosphate kinase OS=Burkholderia sp. (strain 383) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURCJ (Nucleoside diphosphate kinase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURCH (Nucleoside diphosphate kinase OS=Burkholderia cenocepacia (strain HI2424) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURCC (Nucleoside diphosphate kinase OS=Burkholderia cenocepacia (strain MC0-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BURCA (Nucleoside diphosphate kinase OS=Burkholderia cenocepacia (strain AU 1054) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERT   IKPD V + +I +I +RFE  G K+ A ++   S++ A++ Y   KERPFF  L +F+ SGPV+  V EGE  +
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_VIBVY (Nucleoside diphosphate kinase OS=Vibrio vulnificus (strain YJ016) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  + E A   Y + + + FF  L EF++SGP++  V EGE  +
Sbjct:    3 LERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_VIBVU (Nucleoside diphosphate kinase OS=Vibrio vulnificus GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  + E A   Y + + + FF  L EF++SGP++  V EGE  +
Sbjct:    3 LERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAI 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_TERTT (Nucleoside diphosphate kinase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +E+T   +KP+ V++ +I +I SRFE+ G K+VA K+     + A   Y + K RPFF  L EF++SGPV+  V EGE  +
Sbjct:    3 IEKTLSIVKPNAVKKNVIGDIYSRFEKAGLKIVAAKMTQLDDDRAGGFYEEHKARPFFGELVEFMTSGPVLIQVLEGENAV 83          
The following BLAST results are available for this feature:
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BURVG3.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia viet... [more]
NDK_BURS33.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia sp. ... [more]
NDK_BURCJ3.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia cepa... [more]
NDK_BURCH3.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia ceno... [more]
NDK_BURCC3.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia ceno... [more]
NDK_BURCA3.455e-1245.68Nucleoside diphosphate kinase OS=Burkholderia ceno... [more]
NDK_ACIAC3.455e-1243.21Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_VIBVY4.512e-1243.21Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VIBVU4.512e-1243.21Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_TERTT4.512e-1241.98Nucleoside diphosphate kinase OS=Teredinibacter tu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00731 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00731 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623640 ID=BQ623640; Name=BQ623640; organism=Citrus sinensis; type=EST; length=543bp
CAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAGGTCT
CTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAGCTGT
ATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTTGTTT
CAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCTCTCG
GGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGGAAGT
ACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGG
TGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGC
TTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACA
AAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCG
AGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGAGGGA
GTATTACCTTGGGTCCAAACTCCTGGAACCCCAGACCTCCGAA
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