BQ623640

Overview
NameBQ623640
Unique NameBQ623640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:511..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERT++ IKPDGVQRGL+ EIISRFE+KGFKLV +K +  ++E A+KHY +   +PFF GL +++ SGPV+AM WEG+ ++
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  261 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ++E T+I IKPDGVQRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DLK + F+  L ++++SGPV+ M WEG GV+
Sbjct:   84 QVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVV 165          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TF+ +KPDGVQR LI EI+ RFE KG+KL   K++  S + A+ HY + KERPFF  L +F++SGPV AMVWEGE V+
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVI 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY + KE+PFF  L +F++SGPV AMVW+GEGV+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 46/81 (56.79%), Postives = 68/81 (83.95%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            MERT++ +KPDGVQRGLI +IIS+FE+KG+K+V +K++  S+E A++HY +   +PFFNGL +F++SGPV+AMV EG+ V+
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVV 81          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 46/80 (57.50%), Postives = 64/80 (80.00%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIA+KPDGVQR ++ E+I RFE+KGFKLVA+K +   K+  +KHY +L ++PF+  L +++SSGPV+AMVWEG  V+
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVV 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 46/80 (57.50%), Postives = 65/80 (81.25%), Query Frame = 3
Query:  267 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            ERTFIAIKPDGVQRGLIS+I+SRFE +G+KLV IK+V P++   ++HY +  E+PFF  +  +++SGP++A VWEG+ V+
Sbjct:    4 ERTFIAIKPDGVQRGLISKILSRFESRGYKLVGIKLVTPTENLLKQHYAEHVEKPFFPKMLAYMTSGPILATVWEGKDVV 83          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 46/88 (52.27%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  258 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVLPWVQT 521
            +E ERTF+ +KPDGVQRGLI +I+SRFE +G K+V  K +   +E A++HY + +++PFF+GL +F++SGPV AMVWEG+     V+T
Sbjct:    2 SEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRT 89          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 45/86 (52.33%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  264 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVLPWVQT 521
            MERTF+ +KPDGVQRGL+ E+I R ERKG K+VA+K++  ++E A+ HY + +E+PFF+ L ++++SGPV+AMV EG+  +  V+T
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRT 86          
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 45/84 (53.57%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  255 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVL 506
            +++ ERTFIA+KPDGVQRGL+S+I+SRFE+KG+KLVAIK+V    +  ++HY +   +PFF  +  F+ SGP++A VWEG+ V+
Sbjct:    2 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVV 85          
The following BLAST results are available for this feature:
BLAST of BQ623640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HELMI1.266e-2258.02Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK2_SPIOL1.266e-2256.10Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_OCEIH2.159e-2258.02Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_BACCR2.159e-2256.79Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_DESRM2.820e-2256.79Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_GINCI3.683e-2257.50Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_ASHGO4.810e-2257.50Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK_HALMA6.282e-2252.27Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_ARCFU6.282e-2252.33Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_YEAST1.072e-2153.57Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00731 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00731 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623640 ID=BQ623640; Name=BQ623640; organism=Citrus sinensis; type=EST; length=543bp
CAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAGGTCT
CTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAGCTGT
ATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTTGTTT
CAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCTCTCG
GGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGGAAGT
ACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGG
TGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGC
TTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACA
AAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCG
AGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGAGGGA
GTATTACCTTGGGTCCAAACTCCTGGAACCCCAGACCTCCGAA
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