BQ623641

Overview
NameBQ623641
Unique NameBQ623641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1387 contig Csv1_Contig1387:498..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.795e-47
Identity = 93/156 (59.62%), Postives = 108/156 (69.23%), Query Frame = 1
Query:    1 SPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            +PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK L+S     ++S  F+EDWV+IG PAK KV TE    PF DQCT  EKEAVNVSL NLLTYPFV+EG+ N TL L GG+Y
Sbjct:  157 APKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHY 312          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.090e-15
Identity = 46/159 (28.93%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    4 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKGLMSFTFDGNN--STDFIEDWVKIGIPAKSKVLTE-HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            P  +  +C DSRV P+ +   QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS CG   G +    D      T +I +W++   P K ++         F  +    E+    + L+NLL+Y F++E ++N  L + G +Y
Sbjct:   31 PHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGAC-GSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNELKIFGWHY 188          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 47/155 (30.32%), Postives = 69/155 (44.52%), Query Frame = 1
Query:    4 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            P+ +   CSDSRV P+ +   + G+ FV+RN  NI+PPY                + L+++ I+V GHS CG +KGL+            + DW+K     +  VL  +      D       E +   L NL TYP +   L    L+L G  Y
Sbjct:   32 PRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLLKLN-SLQEKLPLVYDWLKHTEATRRLVLDNYSHLEGEDLIEVAVAENILTQLKNLQTYPAIHSRLHRGDLSLHGWIY 184          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 45/155 (29.03%), Postives = 66/155 (42.58%), Query Frame = 1
Query:    4 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            P+ +   CSDSR+ P+ +     GE FV+RN  N++PP+                  L + ++VV GHS CG +KGL+            + DW++     +  VL  +      D       E V   + NL TYP VR  L    L + G  Y
Sbjct:   32 PRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAANGGEGASIEYAIAA-LNIEHVVVCGHSHCGAMKGLLKLN-QLQEDMPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIY 184          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    1 SPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTE---HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            SP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S      +    +  W++    A  +V+ E   H D P   +     +E V   L+NL T+P VR  L    +AL G  Y
Sbjct:   31 SPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS--CQCMDHMPAVSHWLRYADSA--RVVNEARPHSDLP--SKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVY 182          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    1 SPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTE---HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            SP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S      +    +  W++    A  +V+ E   H D P   +     +E V   L+NL T+P VR  L    +AL G  Y
Sbjct:   31 SPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS--CQCMDHMPAVSHWLRYADSA--RVVNEARPHSDLP--SKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGWVY 182          
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Match: CYNT_HELPY (Carbonic anhydrase OS=Helicobacter pylori GN=cynT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 43/159 (27.04%), Postives = 73/159 (45.91%), Query Frame = 1
Query:    4 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKGLMSFTFDGNN--STDFIEDWVKIGIPAKSKVLTE-HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYY 468
            P  +  +C DSRV P+ +   +PGE +V+ N+ N+ PP    K            + H+ V N+++ GHS CG   G +    D      T +I +W++   P K ++         F  +    E+    + L+NLL+Y F++E      L + G +Y
Sbjct:   31 PHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGAC-GSVHLIHDETTKAKTPYIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIFGWHY 188          
The following BLAST results are available for this feature:
BLAST of BQ623641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CAHC_HORVU1.795e-4759.62Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_HELPJ3.090e-1528.93Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]
CYNT_SYNY31.174e-1430.32Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_SYNE79.941e-1429.03Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CYNT_ECOLI6.443e-1332.70Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO576.443e-1332.70Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_HELPY9.304e-1227.04Carbonic anhydrase OS=Helicobacter pylori GN=cynT ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00732 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00732 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623641 ID=BQ623641; Name=BQ623641; organism=Citrus sinensis; type=EST; length=468bp
AGCCCGAAGTATATGGTATTTGCCTGCTCAGACTCCAGGGTTTGCCCGTC
CCATGTGTTGGATTTTCAACCTGGGGAAGCTTTCGTGGTTCGCAATGTTG
CTAACATTGTTCCACCCTATGATCAGACTAAATATGCTGGAGTTGGAGCT
GCTGTCGAGTATGCAGTTTTGCATCTCAAGGTTTCAAACATTGTGGTCAT
TGGGCACAGCGCCTGTGGTGGCATCAAAGGACTCATGTCTTTCACATTTG
ATGGAAACAACTCCACCGATTTCATTGAAGACTGGGTGAAAATTGGCATC
CCTGCCAAGTCTAAGGTGTTAACAGAGCATGGTGACAAGCCTTTTGGAGA
CCAATGCACATACTGTGAAAAGGAGGCGGTGAATGTGTCCCTCAGTAATC
TGCTAACGTATCCATTTGTGAGAGAAGGCTTGGTGAACAAAACTCTGGCA
CTCAAGGGTGGTTACTAT
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