BQ623644

Overview
NameBQ623644
Unique NameBQ623644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623644 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 8.636e-11
Identity = 29/88 (32.95%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  111 IGGFKVPRGTMLLVNSWAIQNDPRIWEEPSKFKPERFREMAGKSDKYMLLPFGTGRRVCPGEGLAMRLVGLALGSLVQCFEWVRTGGD 374
            +G + +P+GT+L +N+  + +    +E+  KF+PER+ +   K + +  LPFG G+R+C G  LA   + LAL  ++Q ++ V T  +
Sbjct:  404 LGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDNE 491          

HSP 2 Score: 27.7202 bits (60), Expect = 8.636e-11
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:    5 DLTALPYLHGVIKETLRMYPAAP 73
            DL  +PYL   +KE++R+ P+ P
Sbjct:  370 DLRNMPYLKACLKESMRLTPSVP 392          
BLAST of BQ623644 vs. ExPASy Swiss-Prot
Match: C518A_DICDI (Probable cytochrome P450 518A1 OS=Dictyostelium discoideum GN=cyp518a1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.647e-11
Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 3
Query:  114 GGFKVPRGTMLLVNSWAIQNDPRIWEEPSKFKPERFREMAGKSDKYMLLPFGTGRRVCPGEGLAMRLVGLALGSLVQCFE 353
            G  K+P+GT ++ + ++I  D   W+ P +FKPERF +    S+ Y   P+G G + C G G +   + ++L +LV  F+
Sbjct:  383 GSLKIPKGTQIIQSLYSIFRDENYWDSPDQFKPERFLDQDSHSNNY--FPYGIGVKNCIGMGFSQDELYISLSNLVLNFK 460          

HSP 2 Score: 28.1054 bits (61), Expect = 8.647e-11
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 2
Query:    2 SDLTALPYLHGVIKETLRMYPAAPLLVPHESSE 100
            S+    P  +  +KE LR+YP  P  VP + ++
Sbjct:  344 SNRNQTPLFNAALKEVLRLYPPVPFGVPRQVNQ 376          
The following BLAST results are available for this feature:
BLAST of BQ623644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
CP24A_RAT8.636e-1132.951,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
C518A_DICDI8.647e-1133.75Probable cytochrome P450 518A1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00735 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623644 ID=BQ623644; Name=BQ623644; organism=Citrus sinensis; type=EST; length=421bp
GTCTGATCTTACCGCACTTCCATATCTCCACGGCGTCATCAAAGAGACAC
TCAGGATGTACCCTGCAGCTCCACTACTAGTTCCTCATGAATCGTCCGAG
GAGTGCACCTATAGGAGGTTTCAAAGTTCCACGTGGCACAATGTTGTTGG
TGAACTCGTGGGCCATACAAAATGATCCTAGAATATGGGAAGAGCCCTCA
AAATTCAAGCCAGAGAGGTTCCGGGAAATGGCAGGGAAAAGTGATAAGTA
TATGCTTTTGCCATTTGGGACAGGGAGGAGAGTGTGTCCTGGAGAAGGCT
TGGCGATGAGGTTGGTTGGGTTGGCATTAGGTTCGTTGGTTCAGTGCTTT
GAGTGGGTGAGAACAGGTGGTGATGAGTTGGTGGACATGAGCGAAGGCAC
TGGGCTTACCATGCCTAGATC
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