BQ623646 | Citrus Genome Database

Overview


Name	BQ623646
Unique Name	BQ623646
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	591

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECODH (Flavoprotein wrbA OS=Escherichia coli (strain K12 / DH10B) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECOBW (Flavoprotein wrbA OS=Escherichia coli (strain K12 / BW2952) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO8A (Flavoprotein wrbA OS=Escherichia coli O8 (strain IAI1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO7I (Flavoprotein wrbA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO55 (Flavoprotein wrbA OS=Escherichia coli (strain 55989 / EAEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO45 (Flavoprotein wrbA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO27 (Flavoprotein wrbA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ECO24 (Flavoprotein wrbA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.278e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.278e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

HSP 3 Score: 20.4014 bits (41), Expect = 2.278e-26
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3

Query:    3 SSVEGVEAKLWQVPETL 53
            S V+G E  + +VPET+
Sbjct:   27 SKVDGAEVVVKRVPETM 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_ESCF3 (Flavoprotein wrbA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.775e-26
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+G
Sbjct:   43 MPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRG 156

HSP 2 Score: 53.9138 bits (128), Expect = 2.775e-26
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            +GG+PYGA T AG DGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:  155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: P25_SCHPO (P25 protein OS=Schizosaccharomyces pombe GN=obr1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.611e-26
Identity = 56/122 (45.90%), Postives = 72/122 (59.02%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY--TFGAGMFEMEKVKGWKS 411
            L  E+L KM A PK + P++T + L + D F+FG+PTR+G   AQF+ F D+TGGLW    L GK  G F+            ALTA+T  VHHGMIFVP+GY  TF   M  +E + G  S
Sbjct:   45 LSPEILEKMHAAPKPNYPVVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWVQGALHGKYFGQFFSTGTLGGGQESTALTAMTSFVHHGMIFVPLGYKNTFSL-MANVESIHGGSS 165

HSP 2 Score: 33.113 bits (74), Expect = 3.611e-26
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 493
            GGS +GAG++AG DGSR  ++ ELE A  QG+
Sbjct:  162 GGSSWGAGSYAGADGSRNVSDDELEIARIQGE 193

The following BLAST results are available for this feature:

BLAST of BQ623646 vs. ExPASy Swiss-Prot

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146


Match Name	E-value	Identity	Description
WRBA_ECODH	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli (strain K12 ...	[more]
WRBA_ECOBW	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli (strain K12 ...	[more]
WRBA_ECO8A	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli O8 (strain I...	[more]
WRBA_ECO7I	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli O7:K1 (strai...	[more]
WRBA_ECO55	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli (strain 5598...	[more]
WRBA_ECO45	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli O45:K1 (stra...	[more]
WRBA_ECO27	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli O127:H6 (str...	[more]
WRBA_ECO24	2.278e-26	39.32	Flavoprotein wrbA OS=Escherichia coli O139:H28 (st...	[more]
WRBA_ESCF3	2.775e-26	39.32	Flavoprotein wrbA OS=Escherichia fergusonii (strai...	[more]
P25_SCHPO	3.611e-26	45.90	P25 protein OS=Schizosaccharomyces pombe GN=obr1 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00737 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00737 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623646 ID=BQ623646; Name=BQ623646; organism=Citrus sinensis; type=EST; length=591bp
CTTCATCTGTTGAGGGTGTTGAAGCCAAATTATGGCAGGTCCCTGAGACA
CTTACCTGAGGAGGTACTTGGTAAGATGAGTGCACCACCAAAGAGTGATG
TACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTT
GGCTTCCCAACAAGATTTGGAATGATGGCTGCTCAATTTAAAGCATTTTT
AGATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTG
CTGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACA
GCGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCC
TATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAG
GGTGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGATGGCTCGAGACA
GCCAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACATTG
CGGGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACA
ATACACCATTAGGTGGACTTATTCCATTCTTTTCGTCTCTA