BQ623646 | Citrus Genome Database

Overview


Name	BQ623646
Unique Name	BQ623646
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	591

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_BURCH (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain HI2424) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.027e-24
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:  103 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ G
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITG 158

HSP 2 Score: 51.9878 bits (123), Expect = 7.027e-24
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:  158 GGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198

HSP 3 Score: 22.3274 bits (46), Expect = 7.027e-24
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3

Query:    6 SVEGVEAKLWQVPETL 53
            SV GVE  L +VPET+
Sbjct:   28 SVPGVEVTLKRVPETI 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_BURCC (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain MC0-3) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.027e-24
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:  103 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ G
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITG 158

HSP 2 Score: 51.9878 bits (123), Expect = 7.027e-24
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:  158 GGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198

HSP 3 Score: 22.3274 bits (46), Expect = 7.027e-24
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3

Query:    6 SVEGVEAKLWQVPETL 53
            SV GVE  L +VPET+
Sbjct:   28 SVPGVEVTLKRVPETI 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_BURCA (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain AU 1054) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.027e-24
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:  103 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ G
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITG 158

HSP 2 Score: 51.9878 bits (123), Expect = 7.027e-24
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:  158 GGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198

HSP 3 Score: 22.3274 bits (46), Expect = 7.027e-24
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3

Query:    6 SVEGVEAKLWQVPETL 53
            SV GVE  L +VPET+
Sbjct:   28 SVPGVEVTLKRVPETI 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_METMA (Flavoprotein wrbA OS=Methanosarcina mazei GN=wrbA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.094e-24
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPK----SDVPIIT----PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY 360
            LPE+VL KM A       + +P++T     + LA AD  +FG PTR+GMM AQ +A LD  G LW      GK   +F              L+    L+H GM+ V + Y
Sbjct:   43 LPEDVLEKMGAIETKKLFAHIPVVTRDMYEDVLAGADALIFGTPTRYGMMTAQMRAVLDGLGKLWSEDAFVGKVGSVFTSSGTQHGGQESTILSFHVTLLHLGMVIVGLPY 153

HSP 2 Score: 59.6918 bits (143), Expect = 9.094e-24
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            GGSPYGA T AG DGSRQP+E ELE A +QG+H+  IAKK+ G
Sbjct:  166 GGSPYGASTIAGGDGSRQPSENELEMARYQGRHVTQIAKKIAG 208

HSP 3 Score: 24.6386 bits (52), Expect = 9.094e-24
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3

Query:    9 VEGVEAKLWQVPETL 53
            VEG E  ++QVPETL
Sbjct:   29 VEGAEVGIYQVPETL 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_PHOLL (Flavoprotein wrbA OS=Photorhabdus luminescens subsp. laumondii GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.146e-24
Identity = 41/103 (39.81%), Postives = 49/103 (47.57%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY 360
            +P E   K         P+ +  EL + D  + G PTRFG MA Q + FLD TGGLW   +L GK A +F               T  T L HHG I VPIGY
Sbjct:   43 IPPEAFTKAGGKVDQSAPVASVQELVDYDAIIIGTPTRFGNMAGQMRNFLDQTGGLWAEGKLYGKVASVFTSTGVGGGQEMTITST-WTTLAHHGFIIVPIGY 144

HSP 2 Score: 54.6842 bits (130), Expect = 9.146e-24
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 2

Query:  398 KGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLK 523
            +GG+PYGA T A GDGSR P E EL+ A +QG+H+A IAKKLK
Sbjct:  156 QGGTPYGASTIADGDGSRIPNENELKIARYQGEHVAKIAKKLK 198

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA1_RHIME (Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.146e-24
Identity = 41/117 (35.04%), Postives = 58/117 (49.57%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            +PE+V            P+ T  ELA+ D  +FG  TR+G +A+Q + F+D TGGLW   +L GK    F              L  I  ++HHGM+ V + Y F  G   +E+VKG
Sbjct:   42 VPEDVAKASHFKLDQPAPVATVEELADYDAIIFGAGTRYGTVASQLRNFIDQTGGLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMMHHGMVVVGLPYAF-QGQMGVEEVKG 157

HSP 2 Score: 54.6842 bits (130), Expect = 9.146e-24
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 2

Query:  398 KGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            KGGSPYGA T  G DGSRQP+ +ELE A  QG H+A IA KL
Sbjct:  156 KGGSPYGASTITGGDGSRQPSAVELEAARFQGAHVARIAAKL 197

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_METAC (Flavoprotein wrbA OS=Methanosarcina acetivorans GN=wrbA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.530e-23
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPK----SDVPIITP--NE--LAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYT 363
            LPEEVL KM A       + +P++T   NE  LA AD  +FG PTR+G M AQ +A LD  GGLW      GK   +F              LT    L+H GMI V + Y+
Sbjct:   43 LPEEVLEKMGAIETKKLFAHIPVLTREMNEEVLAGADALIFGTPTRYGNMTAQMRAVLDGLGGLWNRDAFVGKVGSVFTSSGTQHGGQESTILTFHVTLLHLGMILVGLPYS 154

HSP 2 Score: 55.0694 bits (131), Expect = 1.530e-23
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            GGSPYG  T AG DGSRQP+E EL  A +QG+H+  IAKK+ G
Sbjct:  166 GGSPYGVSTIAGGDGSRQPSENELAMARYQGRHVTLIAKKIAG 208

HSP 3 Score: 24.6386 bits (52), Expect = 1.530e-23
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3

Query:    9 VEGVEAKLWQVPETL 53
            VEG E  ++QVPETL
Sbjct:   29 VEGAEVGIYQVPETL 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_BURPP (Flavoprotein wrbA OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.623e-23
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:  103 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            P+ TP+ELA  D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  + L+H GM+ V + Y+  AG+  M ++ G
Sbjct:   60 PVATPDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHSTLLHQGMVIVGVPYSC-AGLVNMTEITG 158

HSP 2 Score: 53.1434 bits (126), Expect = 2.623e-23
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 526
            GG+PYGA T AG DGSRQP++ EL+ A  QGKH+A +A K+ G
Sbjct:  158 GGTPYGATTLAGADGSRQPSQNELDIARFQGKHVASLALKIAG 200

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.633e-23
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:  103 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 402
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ G
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITG 158

HSP 2 Score: 48.9062 bits (115), Expect = 5.633e-23
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            GG+PYGA T AG DGSRQP+  EL+ A +QGK +A +A KL
Sbjct:  158 GGTPYGATTLAGADGSRQPSANELDIARYQGKRVAELASKL 198

HSP 3 Score: 22.3274 bits (46), Expect = 5.633e-23
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3

Query:    6 SVEGVEAKLWQVPETL 53
            SV GVE  L +VPET+
Sbjct:   28 SVAGVEVTLKRVPETI 43

[Close]

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Match: WRBA_AZOSE (Flavoprotein wrbA OS=Azoarcus sp. (strain EbN1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.772e-23
Identity = 42/108 (38.89%), Postives = 53/108 (49.07%), Query Frame = 1

Query:   52 LPEEVLGKMSAPPKSD----VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYT 363
            +P+EVL K  A         VP+    +L EAD  +FG PTRFG M AQ + FLD TGGLW    L GK   +F              L+    L+H GM+ V + YT
Sbjct:   42 VPDEVLEKSGAKTAQQAFAHVPVAKTEQLPEADAIIFGTPTRFGNMCAQMRNFLDQTGGLWMKGSLVGKVGSVFTSTATQHGGQESTILSTHITLLHQGMVLVGLPYT 149

HSP 2 Score: 51.6026 bits (122), Expect = 5.772e-23
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 2

Query:  401 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 520
            GGSPYGA T AG DGSR P++ E+E A  QG+H+A IA  L
Sbjct:  161 GGSPYGAATIAGGDGSRMPSQTEIEMAKFQGRHVAEIASAL 201

The following BLAST results are available for this feature:

BLAST of BQ623646 vs. ExPASy Swiss-Prot

BLAST of BQ623646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146


Match Name	E-value	Identity	Description
WRBA_BURCH	7.027e-24	39.00	Flavoprotein wrbA OS=Burkholderia cenocepacia (str...	[more]
WRBA_BURCC	7.027e-24	39.00	Flavoprotein wrbA OS=Burkholderia cenocepacia (str...	[more]
WRBA_BURCA	7.027e-24	39.00	Flavoprotein wrbA OS=Burkholderia cenocepacia (str...	[more]
WRBA_METMA	9.094e-24	36.04	Flavoprotein wrbA OS=Methanosarcina mazei GN=wrbA ...	[more]
WRBA_PHOLL	9.146e-24	39.81	Flavoprotein wrbA OS=Photorhabdus luminescens subs...	[more]
WRBA1_RHIME	9.146e-24	35.04	Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1...	[more]
WRBA_METAC	1.530e-23	40.18	Flavoprotein wrbA OS=Methanosarcina acetivorans GN...	[more]
WRBA_BURPP	2.623e-23	39.00	Flavoprotein wrbA OS=Burkholderia phytofirmans (st...	[more]
WRBA_BURS3	5.633e-23	39.00	Flavoprotein wrbA OS=Burkholderia sp. (strain 383)...	[more]
WRBA_AZOSE	5.772e-23	38.89	Flavoprotein wrbA OS=Azoarcus sp. (strain EbN1) GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00737 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00737 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623646 ID=BQ623646; Name=BQ623646; organism=Citrus sinensis; type=EST; length=591bp
CTTCATCTGTTGAGGGTGTTGAAGCCAAATTATGGCAGGTCCCTGAGACA
CTTACCTGAGGAGGTACTTGGTAAGATGAGTGCACCACCAAAGAGTGATG
TACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTT
GGCTTCCCAACAAGATTTGGAATGATGGCTGCTCAATTTAAAGCATTTTT
AGATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTG
CTGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACA
GCGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCC
TATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAG
GGTGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGATGGCTCGAGACA
GCCAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACATTG
CGGGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACA
ATACACCATTAGGTGGACTTATTCCATTCTTTTCGTCTCTA