BQ623647

Overview
NameBQ623647
Unique NameBQ623647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length241
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.458e-22
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    3 TEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            TEVR N    W+RPD KTQVTVEY NENG ++P+R HTV+IS QH E VTN+EI   L E VIKP IP   LD +TIFH
Sbjct:  154 TEVRNNSILSWMRPDAKTQVTVEYRNENGTLIPLRRHTVVISVQHSEDVTNEEIRKRLMEEVIKPSIPAHLLDGETIFH 232          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.248e-22
Identity = 44/78 (56.41%), Postives = 63/78 (80.77%), Query Frame = 3
Query:    6 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            E+R++G  PWL+PD KTQVTV+Y  +NGA++P+RVHTV+IS QH+E +T +++   LKE VI+ V+P +YLDE TI+H
Sbjct:  167 ELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYH 244          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.591e-21
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   12 RKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            R++G+ PWLRPD KTQVT+EY ++NGA+VP+RV TV++S QH   +T +E+  ++ E +IK  IP KYLDEKT++H
Sbjct:  167 RRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYH 242          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.782e-20
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            + R++G+ PWLRPD KTQVT+EY ++ GA+VP +V TV++S QH E +T +E+  ++ E +IK  IP KYLDE T+FH
Sbjct:  162 KARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFH 239          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.970e-20
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 TEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            TEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  158 TEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.970e-20
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 TEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            TEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  158 TEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.185e-20
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  154 ELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.185e-20
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  154 ELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.772e-20
Identity = 37/76 (48.68%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   12 RKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            R++G+ PWLRPD KTQVT+EY  ENGA++P RV T+++S QH ++++ +++ +++ E +IKP +P   LDEKT++H
Sbjct:  155 RRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYH 230          
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 239
            ++R+NGT PW+RPD K+QVT+EY + +GA +P+RVHTV++STQH   VT +++   +   VIK VIP   LDE T+FH
Sbjct:  153 KLRRNGTLPWVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFH 230          
The following BLAST results are available for this feature:
BLAST of BQ623647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
METK_ACACA1.458e-2263.29S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK1_BOVIN3.248e-2256.41S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_NEUCR3.591e-2155.26S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_ASCIM1.782e-2052.56S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK_CLOPS3.970e-2060.76S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP13.970e-2060.76S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK4_CAEEL5.185e-2055.13Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL5.185e-2055.13Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_SCHPO6.772e-2048.68S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK1_CAEEL1.155e-1952.56Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00738 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00738 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623647 ID=BQ623647; Name=BQ623647; organism=Citrus sinensis; type=EST; length=241bp
TTACCGAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGC
AAGACACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCC
TGTGAGAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGA
CTAATGATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTT
ATTCCTGAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
back to top